Search Results - David Heckerman

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  1. 1

    ConPADE: genome assembly ploidy estimation from next-generation sequencing data. by Gabriel R A Margarido, David Heckerman

    Published in PLoS Computational Biology (2015-04-01)
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  2. 2

    Conditional random fields for fast, large-scale genome-wide association studies. by Jim C Huang, Christopher Meek, Carl Kadie, David Heckerman

    Published in PLoS ONE (2011-01-01)
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  3. 3

    Learning transcriptional regulatory relationships using sparse graphical models. by Xiang Zhang, Wei Cheng, Jennifer Listgarten, Carl Kadie, Shunping Huang, Wei Wang, David Heckerman

    Published in PLoS ONE (2012-01-01)
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  4. 4

    Improved learning in U.S. history and decision competence with decision-focused curriculum. by David Jacobson, Andrew Parker, Chris Spetzler, Wandi Bruine de Bruin, Keith Hollenbeck, David Heckerman, Baruch Fischhoff

    Published in PLoS ONE (2012-01-01)
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  5. 5

    Statistical resolution of ambiguous HLA typing data. by Jennifer Listgarten, Zabrina Brumme, Carl Kadie, Gao Xiaojiang, Bruce Walker, Mary Carrington, Philip Goulder, David Heckerman

    Published in PLoS Computational Biology (2008-02-01)
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  6. 6

    Ranking of non-coding pathogenic variants and putative essential regions of the human genome by Alex Wells, David Heckerman, Ali Torkamani, Li Yin, Jonathan Sebat, Bing Ren, Amalio Telenti, Julia di Iulio

    Published in Nature Communications (2019-11-01)
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  7. 7

    Coping with viral diversity in HIV vaccine design. by David C Nickle, Morgane Rolland, Mark A Jensen, Sergei L Kosakovsky Pond, Wenjie Deng, Mark Seligman, David Heckerman, James I Mullins, Nebojsa Jojic

    Published in PLoS Computational Biology (2007-04-01)
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  8. 8

    Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins. by Morgane Rolland, David C Nickle, Wenjie Deng, Nicole Frahm, Christian Brander, Gerald H Learn, David Heckerman, Nebosja Jojic, Vladimir Jojic, Bruce D Walker, James I Mullins

    Published in PLoS ONE (2007-09-01)
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  9. 9

    Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. by Jonathan M Carlson, Zabrina L Brumme, Christine M Rousseau, Chanson J Brumme, Philippa Matthews, Carl Kadie, James I Mullins, Bruce D Walker, P Richard Harrigan, Philip J R Goulder, David Heckerman

    Published in PLoS Computational Biology (2008-11-01)
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  10. 10

    Nef-specific CD8+ T cell responses contribute to HIV-1 immune control. by Emily Adland, Jonathan M Carlson, Paolo Paioni, Henrik Kløverpris, Roger Shapiro, Anthony Ogwu, Lynn Riddell, Graz Luzzi, Fabian Chen, Thambiah Balachandran, David Heckerman, Anette Stryhn, Anne Edwards, Thumbi Ndung'u, Bruce D Walker, Søren Buus, Philip Goulder, Philippa C Matthews

    Published in PLoS ONE (2013-01-01)
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  11. 11

    Co-operative additive effects between HLA alleles in control of HIV-1. by Philippa C Matthews, Jennifer Listgarten, Jonathan M Carlson, Rebecca Payne, Kuan-Hsiang Gary Huang, John Frater, Dominique Goedhals, Dewald Steyn, Cloete van Vuuren, Paolo Paioni, Pieter Jooste, Anthony Ogwu, Roger Shapiro, Zenele Mncube, Thumbi Ndung'u, Bruce D Walker, David Heckerman, Philip J R Goulder

    Published in PLoS ONE (2012-01-01)
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  12. 12

    Assessing VirScan serosurvey epitope profiling variability between in-clinic venous blood draw and capillary blood self-sampling device by Linda M. Sircy, Terry L. Stevens-Ayers, Elizabeth M. Krantz, Laurel Joncas-Schronce, Nina S. O. Ozbek, Rachel L. Blazevic, Larry Mose, Louise E. Kimball, Ryan Basom, Sayan Dasgupta, Antje Heit, Frank Schmitz, David Heckerman, Rachel A. Bender Ignacio, Joshua A. Hill, Jim Boonyaratanakornkit, Michael Boeckh, Alpana Waghmare

    Published in Microbiology Spectrum (2026-06-01)
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  13. 13

    Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations. by Kuan-Hsiang Gary Huang, Dominique Goedhals, Jonathan M Carlson, Mark A Brockman, Swati Mishra, Zabrina L Brumme, Stephen Hickling, Christopher S W Tang, Toshiyuki Miura, Chris Seebregts, David Heckerman, Thumbi Ndung'u, Bruce Walker, Paul Klenerman, Dewald Steyn, Philip Goulder, Rodney Phillips, Bloemfontein-Oxford Collaborative Group, Cloete van Vuuren, John Frater

    Published in PLoS ONE (2011-04-01)
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  14. 14

    HIV-1 p24(gag) derived conserved element DNA vaccine increases the breadth of immune response in mice. by Viraj Kulkarni, Margherita Rosati, Antonio Valentin, Brunda Ganneru, Ashish K Singh, Jian Yan, Morgane Rolland, Candido Alicea, Rachel Kelly Beach, Gen-Mu Zhang, Sylvie Le Gall, Kate E Broderick, Niranjan Y Sardesai, David Heckerman, Beatriz Mothe, Christian Brander, David B Weiner, James I Mullins, George N Pavlakis, Barbara K Felber

    Published in PLoS ONE (2013-01-01)
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  15. 15

    Role of transmitted Gag CTL polymorphisms in defining replicative capacity and early HIV-1 pathogenesis. by Jessica L Prince, Daniel T Claiborne, Jonathan M Carlson, Malinda Schaefer, Tianwei Yu, Shabir Lahki, Heather A Prentice, Ling Yue, Sundaram A Vishwanathan, William Kilembe, Paul Goepfert, Matthew A Price, Jill Gilmour, Joseph Mulenga, Paul Farmer, Cynthia A Derdeyn, Jiaming Tang, David Heckerman, Richard A Kaslow, Susan A Allen, Eric Hunter

    Published in PLoS Pathogens (2012-01-01)
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  16. 16

    CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control. by Beatriz Mothe, Anuska Llano, Javier Ibarrondo, Jennifer Zamarreño, Mattia Schiaulini, Cristina Miranda, Marta Ruiz-Riol, Christoph T Berger, M José Herrero, Eduard Palou, Montse Plana, Morgane Rolland, Ashok Khatri, David Heckerman, Florencia Pereyra, Bruce D Walker, David Weiner, Roger Paredes, Bonaventura Clotet, Barbara K Felber, George N Pavlakis, James I Mullins, Christian Brander

    Published in PLoS ONE (2012-01-01)
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  17. 17

    HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. by Zabrina L Brumme, Mina John, Jonathan M Carlson, Chanson J Brumme, Dennison Chan, Mark A Brockman, Luke C Swenson, Iris Tao, Sharon Szeto, Pamela Rosato, Jennifer Sela, Carl M Kadie, Nicole Frahm, Christian Brander, David W Haas, Sharon A Riddler, Richard Haubrich, Bruce D Walker, P Richard Harrigan, David Heckerman, Simon Mallal

    Published in PLoS ONE (2009-08-01)
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  18. 18

    A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control by István Bartha, Jonathan M Carlson, Chanson J Brumme, Paul J McLaren, Zabrina L Brumme, Mina John, David W Haas, Javier Martinez-Picado, Judith Dalmau, Cecilio López-Galíndez, Concepción Casado, Andri Rauch, Huldrych F Günthard, Enos Bernasconi, Pietro Vernazza, Thomas Klimkait, Sabine Yerly, Stephen J O’Brien, Jennifer Listgarten, Nico Pfeifer, Christoph Lippert, Nicolo Fusi, Zoltán Kutalik, Todd M Allen, Viktor Müller, P Richard Harrigan, David Heckerman, Amalio Telenti, Jacques Fellay, for the HIV Genome-to-Genome Study and the Swiss HIV Cohort Study

    Published in eLife (2013-10-01)
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