Search Results - Doreen Ware

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  1. 1

    Two related families of metal transferases, ZNG1 and ZNG2, are involved in acclimation to poor Zn nutrition in Arabidopsis by Lifang Zhang, Janeen Braynen, Audrey Fahey, Kriti Chopra, Paolo Cifani, Dimiru Tadesse, Michael Regulski, Fangle Hu, Hubertus J. J. van Dam, Meng Xie, Doreen Ware, Doreen Ware, Crysten E. Blaby-Haas, Crysten E. Blaby-Haas

    Published in Frontiers in Plant Science (2023-10-01)
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  2. 2

    Expanding and Vetting Sorghum bicolor Gene Annotations through Transcriptome and Methylome Sequencing by Andrew Olson, Robert R. Klein, Diana V. Dugas, Zhenyuan Lu, Michael Regulski, Patricia E. Klein, Doreen Ware

    Published in The Plant Genome (2014-07-01)
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  3. 3

    Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research by Muskan Kapoor, Enrique Sapena Ventura, Amy Walsh, Alexey Sokolov, Nancy George, Sunita Kumari, Nicholas J. Provart, Benjamin Cole, Marc Libault, Timothy Tickle, Wesley C. Warren, James E. Koltes, Irene Papatheodorou, Irene Papatheodorou, Doreen Ware, Doreen Ware, Peter W. Harrison, Christine Elsik, Galabina Yordanova, Tony Burdett, Christopher K. Tuggle

    Published in Frontiers in Genetics (2024-11-01)
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  4. 4

    Ten new high-quality genome assemblies for diverse bioenergy sorghum genotypes by William G. Voelker, William G. Voelker, Krittika Krishnan, Krittika Krishnan, Kapeel Chougule, Louie C. Alexander, Louie C. Alexander, Zhenyuan Lu, Andrew Olson, Doreen Ware, Doreen Ware, Kittikun Songsomboon, Kittikun Songsomboon, Cristian Ponce, Cristian Ponce, Zachary W. Brenton, Zachary W. Brenton, J. Lucas Boatwright, J. Lucas Boatwright, Elizabeth A. Cooper, Elizabeth A. Cooper

    Published in Frontiers in Plant Science (2023-01-01)
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  5. 5

    Author Correction: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline by Shujun Ou, Weijia Su, Yi Liao, Kapeel Chougule, Jireh R. A. Agda, Adam J. Hellinga, Carlos Santiago Blanco Lugo, Tyler A. Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford

    Published in Genome Biology (2022-03-01)
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  6. 6

    A stele‐enriched gene regulatory network in the Arabidopsis root by Siobhan M Brady, Lifang Zhang, Molly Megraw, Natalia J Martinez, Eric Jiang, Charles S Yi, Weilin Liu, Anna Zeng, Mallorie Taylor‐Teeples, Dahae Kim, Sebastian Ahnert, Uwe Ohler, Doreen Ware, Albertha J M Walhout, Philip N Benfey

    Published in Molecular Systems Biology (2011-01-01)
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  7. 7

    An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype by Amandine Velt, Bianca Frommer, Sophie Blanc, Daniela Holtgräwe, Éric Duchêne, Vincent Dumas, Jérôme Grimplet, Philippe Hugueney, Catherine Kim, Marie Lahaye, José Tomás Matus, David Navarro-Payá, Luis Orduña, Marcela K Tello-Ruiz, Nicola Vitulo, Doreen Ware, Camille Rustenholz

    Published in G3: Genes, Genomes, Genetics (2023-03-01)
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  8. 8

    A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset by Yong Zhou, Nagarajan Kathiresan, Zhichao Yu, Luis F. Rivera, Yujian Yang, Manjula Thimma, Keerthana Manickam, Dmytro Chebotarov, Ramil Mauleon, Kapeel Chougule, Sharon Wei, Tingting Gao, Carl D. Green, Andrea Zuccolo, Weibo Xie, Doreen Ware, Jianwei Zhang, Kenneth L. McNally, Rod A. Wing

    Published in BMC Biology (2024-01-01)
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  9. 9

    Double triage to identify poorly annotated genes in maize: The missing link in community curation. by Marcela K Tello-Ruiz, Cristina F Marco, Fei-Man Hsu, Rajdeep S Khangura, Pengfei Qiao, Sirjan Sapkota, Michelle C Stitzer, Rachael Wasikowski, Hao Wu, Junpeng Zhan, Kapeel Chougule, Lindsay C Barone, Cornel Ghiban, Demitri Muna, Andrew C Olson, Liya Wang, Doreen Ware, David A Micklos

    Published in PLoS ONE (2019-01-01)
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  10. 10

    Correction: Double triage to identify poorly annotated genes in maize: The missing link in community curation. by Marcela K Tello-Ruiz, Cristina F Marco, Fei-Man Hsu, Rajdeep S Khangura, Pengfei Qiao, Sirjan Sapkota, Michelle C Stitzer, Rachael Wasikowski, Hao Wu, Junpeng Zhan, Kapeel Chougule, Lindsay M Barone, Cornel Ghiban, Demitri Muna, Andrew C Olson, Liya Wang, Doreen Ware, David A Micklos

    Published in PLoS ONE (2024-01-01)
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  11. 11

    MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication by Jonathan Cahn, Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Srividya Ramakrishnan, Kapeel Chougule, Sharon Wei, Zhenyuan Lu, Xiaosa Xu, Umamaheswari Ramu, Jorg Drenkow, Cassidy Danyko, Melissa Kramer, Arun Seetharam, Matthew B. Hufford, W. Richard McCombie, Doreen Ware, David Jackson, Michael C. Schatz, Thomas R. Gingeras, Robert A. Martienssen

    Published in Nature Communications (2024-12-01)
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  12. 12

    Author Correction: MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication by Jonathan Cahn, Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Srividya Ramakrishnan, Kapeel Chougule, Sharon Wei, Zhenyuan Lu, Xiaosa Xu, Umamaheswari Ramu, Jorg Drenkow, Cassidy Danyko, Melissa Kramer, Arun Seetharam, Matthew B. Hufford, W. Richard McCombie, Doreen Ware, David Jackson, Michael C. Schatz, Thomas R. Gingeras, Robert A. Martienssen

    Published in Nature Communications (2025-07-01)
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  13. 13

    Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice by Yong Zhou, Zhichao Yu, Dmytro Chebotarov, Kapeel Chougule, Zhenyuan Lu, Luis F. Rivera, Nagarajan Kathiresan, Noor Al-Bader, Nahed Mohammed, Aseel Alsantely, Saule Mussurova, João Santos, Manjula Thimma, Maxim Troukhan, Alice Fornasiero, Carl D. Green, Dario Copetti, David Kudrna, Victor Llaca, Mathias Lorieux, Andrea Zuccolo, Doreen Ware, Kenneth McNally, Jianwei Zhang, Rod A. Wing

    Published in Nature Communications (2023-03-01)
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  14. 14

    Detailed analysis of a contiguous 22-Mb region of the maize genome. by Fusheng Wei, Joshua C Stein, Chengzhi Liang, Jianwei Zhang, Robert S Fulton, Regina S Baucom, Emanuele De Paoli, Shiguo Zhou, Lixing Yang, Yujun Han, Shiran Pasternak, Apurva Narechania, Lifang Zhang, Cheng-Ting Yeh, Kai Ying, Dawn H Nagel, Kristi Collura, David Kudrna, Jennifer Currie, Jinke Lin, Hyeran Kim, Angelina Angelova, Gabriel Scara, Marina Wissotski, Wolfgang Golser, Laura Courtney, Scott Kruchowski, Tina A Graves, Susan M Rock, Stephanie Adams, Lucinda A Fulton, Catrina Fronick, William Courtney, Melissa Kramer, Lori Spiegel, Lydia Nascimento, Ananth Kalyanaraman, Cristian Chaparro, Jean-Marc Deragon, Phillip San Miguel, Ning Jiang, Susan R Wessler, Pamela J Green, Yeisoo Yu, David C Schwartz, Blake C Meyers, Jeffrey L Bennetzen, Robert A Martienssen, W Richard McCombie, Srinivas Aluru, Sandra W Clifton, Patrick S Schnable, Doreen Ware, Richard K Wilson, Rod A Wing

    Published in PLoS Genetics (2009-11-01)
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