Search Results - Ellis Patrick

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  1. 1

    Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2 by Yingxin Lin, Yue Cao, Elijah Willie, Ellis Patrick, Jean Y. H. Yang

    Published in Nature Communications (2023-07-01)
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  2. 2

    Benchmarking the translational potential of spatial gene expression prediction from histology by Chuhan Wang, Adam S. Chan, Xiaohang Fu, Shila Ghazanfar, Jinman Kim, Ellis Patrick, Jean Y. H. Yang

    Published in Nature Communications (2025-02-01)
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  3. 3

    Circulating cytokine and chemokine patterns associated with cytomegalovirus reactivation after stem cell transplantation by Lauren Stern, Helen M McGuire, Selmir Avdic, Emily Blyth, David Gottlieb, Ellis Patrick, Allison Abendroth, Barry Slobedman

    Published in Clinical & Translational Immunology (2023-01-01)
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  4. 4

    Thinking process templates for constructing data stories with SCDNEY [version 2; peer review: 2 approved] by Marni Torkel, Pengyi Yang, Shila Ghazanfar, Nick Robertson, Yingxin Lin, Andy Tran, Hani Kim, Yue Cao, Ellis Patrick, Jean Yang

    Published in F1000Research (2023-12-01)
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  5. 5

    BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data by Xiaohang Fu, Yingxin Lin, David M. Lin, Daniel Mechtersheimer, Chuhan Wang, Farhan Ameen, Shila Ghazanfar, Ellis Patrick, Jinman Kim, Jean Y. H. Yang

    Published in Nature Communications (2024-01-01)
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  6. 6

    Reproductive period and epigenetic modifications of the oxidative phosphorylation pathway in the human prefrontal cortex. by Riley M Bove, Ellis Patrick, Cristin McCabe Aubin, Gyan Srivastava, Julie A Schneider, David A Bennett, Philip L De Jager, Lori B Chibnik

    Published in PLoS ONE (2018-01-01)
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  7. 7

    Construction and optimization of multi-platform precision pathways for precision medicine by Andy Tran, Andy Wang, Jamie Mickaill, Dario Strbenac, Mark Larance, Stephen T. Vernon, Stuart M. Grieve, Gemma A. Figtree, Ellis Patrick, Jean Yee Hwa Yang

    Published in Scientific Reports (2024-02-01)
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  8. 8

    Defining early changes in Alzheimer’s disease from RNA sequencing of brain regions differentially affected by pathology by Boris Guennewig, Julia Lim, Lee Marshall, Andrew N. McCorkindale, Patrick J. Paasila, Ellis Patrick, Jillian J. Kril, Glenda M. Halliday, Antony A. Cooper, Greg T. Sutherland

    Published in Scientific Reports (2021-03-01)
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  9. 9

    Author Correction: Defining early changes in Alzheimer’s disease from RNA sequencing of brain regions differentially affected by pathology by Boris Guennewig, Julia Lim, Lee Marshall, Andrew N. McCorkindale, Patrick J. Paasila, Ellis Patrick, Jillian J. Kril, Glenda M. Halliday, Antony A. Cooper, Greg T. Sutherland

    Published in Scientific Reports (2023-06-01)
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  10. 10

    The spatial biology of HIV infection. by Kevin Hu, Thomas R O'Neil, Heeva Baharlou, Paul J Austin, Jackson F Karrasch, Lara Sarkawt, Yuchen Li, Kirstie M Bertram, Anthony L Cunningham, Ellis Patrick, Andrew N Harman

    Published in PLoS Pathogens (2025-01-01)
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  11. 11

    Mass cytometry reveals immune signatures associated with cytomegalovirus (CMV) control in recipients of allogeneic haemopoietic stem cell transplant and CMV‐specific T cells by Helen M McGuire, Simone Rizzetto, Barbara P Withers, Leighton E Clancy, Selmir Avdic, Lauren Stern, Ellis Patrick, Barbara Fazekas de St Groth, Barry Slobedman, David J Gottlieb, Fabio Luciani, Emily Blyth

    Published in Clinical & Translational Immunology (2020-01-01)
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  12. 12

    Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine by Kevin Y. X. Wang, Gulietta M. Pupo, Varsha Tembe, Ellis Patrick, Dario Strbenac, Sarah-Jane Schramm, John F. Thompson, Richard A. Scolyer, Samuel Muller, Garth Tarr, Graham J. Mann, Jean Y. H. Yang

    Published in npj Digital Medicine (2022-07-01)
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  13. 13

    Classification of the tumor immune microenvironment and associations with outcomes in patients with metastatic melanoma treated with immunotherapies by Ines Pires da Silva, Richard A Scolyer, Georgina Long, Matteo S Carlino, Ismael A Vergara, James S Wilmott, Serigne N Lo, Tuba N Gide, Alexander Maxwell Menzies, Nurudeen A Adegoke, Yizhe Mao, Camelia Quek, Ellis Patrick

    Published in Journal for ImmunoTherapy of Cancer (2023-10-01)
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  14. 14

    Lipidomics Profiling and Risk of Coronary Artery Disease in the BioHEART-CT Discovery Cohort by Dantong Zhu, Stephen T. Vernon, Zac D’Agostino, Jingqin Wu, Corey Giles, Adam S. Chan, Katharine A. Kott, Michael P. Gray, Alireza Gholipour, Owen Tang, Habtamu B. Beyene, Ellis Patrick, Stuart M. Grieve, Peter J. Meikle, Gemma A. Figtree, Jean Y. H. Yang

    Published in Biomolecules (2023-05-01)
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  15. 15

    Mass cytometry analysis reveals altered immune profiles in patients with coronary artery disease by Katharine A Kott, Adam S Chan, Stephen T Vernon, Thomas Hansen, Taiyun Kim, Macha deDreu, Bavani Gunasegaran, Andrew J Murphy, Ellis Patrick, Peter J Psaltis, Stuart M Grieve, Jean Y Yang, Barbara Fazekas de St Groth, Helen M McGuire, Gemma A Figtree

    Published in Clinical & Translational Immunology (2023-01-01)
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  16. 16

    Cross-platform comparison of immune signatures in immunotherapy-treated patients with advanced melanoma using a rank-based scoring approach by Yizhe Mao, Tuba N. Gide, Nurudeen A. Adegoke, Camelia Quek, Nigel Maher, Alison Potter, Ellis Patrick, Robyn P. M. Saw, John F. Thompson, Andrew J. Spillane, Kerwin F. Shannon, Matteo S. Carlino, Serigne N. Lo, Alexander M. Menzies, Inês Pires da Silva, Georgina V. Long, Richard A. Scolyer, James S. Wilmott

    Published in Journal of Translational Medicine (2023-04-01)
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  17. 17

    Characterization of the human myelin oligodendrocyte glycoprotein antibody response in demyelination by Fiona Tea, Joseph A. Lopez, Sudarshini Ramanathan, Vera Merheb, Fiona X. Z. Lee, Alicia Zou, Deepti Pilli, Ellis Patrick, Anneke van der Walt, Mastura Monif, Esther M. Tantsis, Eppie M. Yiu, Steve Vucic, Andrew P. D. Henderson, Anthony Fok, Clare L. Fraser, Jeanette Lechner-Scott, Stephen W. Reddel, Simon Broadley, Michael H. Barnett, David A. Brown, Jan D. Lunemann, Russell C. Dale, Fabienne Brilot, the Australasian and New Zealand MOG Study Group

    Published in Acta Neuropathologica Communications (2019-09-01)
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  18. 18

    Brief Normothermic Machine Perfusion Rejuvenates Discarded Human Kidneys by Ahmer M. Hameed, PhD, David B. Lu, PhD, Ellis Patrick, PhD, Bo Xu, PhD, Min Hu, PhD, Yi Vee Chew, PhD, Karen Keung, PhD, Chow H. P’ng, MBBS, Renan Gaspi, BSc, Chris Zhang, BSc, Paul Robertson, LLB, Stephen Alexander, PhD, Gordon Thomas, MBBS, Jerome Laurence, PhD, Ronald De Roo, MBBS, Germaine Wong, PhD, Ray Miraziz, MSc, Greg O’Grady, PhD, Lawrence Yuen, MBBS, Wayne J. Hawthorne, PhD, Natasha M. Rogers, PhD, Henry C. Pleass, MD

    Published in Transplantation Direct (2019-11-01)
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