Search Results - Geo Pertea

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  1. 1

    GFF Utilities: GffRead and GffCompare [version 2; peer review: 3 approved] by Geo Pertea, Mihaela Pertea

    Published in F1000Research (2020-09-01)
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  2. 2

    CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise by Mihaela Pertea, Alaina Shumate, Geo Pertea, Ales Varabyou, Florian P. Breitwieser, Yu-Chi Chang, Anil K. Madugundu, Akhilesh Pandey, Steven L. Salzberg

    Published in Genome Biology (2018-11-01)
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  3. 3

    Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing. by Andrew C Read, Matthew J Moscou, Aleksey V Zimin, Geo Pertea, Rachel S Meyer, Michael D Purugganan, Jan E Leach, Lindsay R Triplett, Steven L Salzberg, Adam J Bogdanove

    Published in PLoS Genetics (2020-01-01)
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  4. 4

    First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans) by Ruibang Luo, Aleksey Zimin, Rachael Workman, Yunfan Fan, Geo Pertea, Nina Grossman, Maggie P. Wear, Bei Jia, Heather Miller, Arturo Casadevall, Winston Timp, Sean X. Zhang, Steven L. Salzberg

    Published in G3: Genes, Genomes, Genetics (2017-11-01)
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  5. 5

    Large-scale transcriptomic analyses of major depressive disorder reveal convergent dysregulation of synaptic pathways in excitatory neurons by Fernando S. Goes, Leonardo Collado-Torres, Peter P. Zandi, Louise Huuki-Myers, Ran Tao, Andrew E. Jaffe, Geo Pertea, Joo Heon Shin, Daniel R. Weinberger, Joel E. Kleinman, Thomas M. Hyde

    Published in Nature Communications (2025-04-01)
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  6. 6

    Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus by Kynon J. M. Benjamin, Ria Arora, Arthur S. Feltrin, Geo Pertea, Hunter H. Giles, Joshua M. Stolz, Laura D’Ignazio, Leonardo Collado-Torres, Joo Heon Shin, William S. Ulrich, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Apuã C. M. Paquola, Jennifer A. Erwin

    Published in Nature Communications (2024-05-01)
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  7. 7

    Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. by Rami A Dalloul, Julie A Long, Aleksey V Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg, Pascal Bouffard, David W Burt, Oswald Crasta, Richard P M A Crooijmans, Kristal Cooper, Roger A Coulombe, Supriyo De, Mary E Delany, Jerry B Dodgson, Jennifer J Dong, Clive Evans, Karin M Frederickson, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A M Groenen, Tim T Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P McElroy, Thero Modise, Mikhail Nefedov, Cédric Notredame, Ian R Paton, William S Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L Salzberg, Michael C Schatz, Chantel Scheuring, Carl J Schmidt, Steven Schroeder, Stephen M J Searle, Edward J Smith, Jacqueline Smith, Tad S Sonstegard, Peter F Stadler, Hakim Tafer, Zhijian Jake Tu, Curtis P Van Tassell, Albert J Vilella, Kelly P Williams, James A Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, Kent M Reed

    Published in PLoS Biology (2010-09-01)
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