Search Results - J. Alm

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  1. 1

    In vitro osteogenic capacity of bone marrow MSCs from postmenopausal women reflect the osseointegration of their cementless hip stems by Jessica J. Alm, Niko Moritz, Hannu T. Aro

    Published in Bone Reports (2016-12-01)
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  2. 2

    Fast and accurate variant identification tool for sequencing-based studies by Jeffry M. Gaston, Eric J. Alm, An-Ni Zhang

    Published in BMC Biology (2024-04-01)
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  3. 3

    X-Mapper: fast and accurate sequence alignment via gapped x-mers by Jeffry M. Gaston, Eric J. Alm, An-Ni Zhang

    Published in Genome Biology (2025-01-01)
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  4. 4

    Correcting for batch effects in case-control microbiome studies. by Sean M Gibbons, Claire Duvallet, Eric J Alm

    Published in PLoS Computational Biology (2018-04-01)
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  5. 5

    dbOTU3: A new implementation of distribution-based OTU calling. by Scott W Olesen, Claire Duvallet, Eric J Alm

    Published in PLoS ONE (2017-01-01)
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  6. 6

    Author Correction: X-Mapper: fast and accurate sequence alignment via gapped x-mers by Jeffry M. Gaston, Eric J. Alm, An-Ni Zhang

    Published in Genome Biology (2025-01-01)
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  7. 7

    Correction: The Life-Cycle of Operons. by Morgan N Price, Adam P Arkin, Eric J Alm

    Published in PLoS Genetics (2006-07-01)
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  8. 8

    Meta-analysis of gut microbiome studies identifies disease-specific and shared responses by Claire Duvallet, Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm

    Published in Nature Communications (2017-12-01)
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  9. 9

    Sulfated dietary fiber protects gut microbiota from antibiotics by Fuqing Wu, Xiaoqian Annie Yu, David Angeles-Albores, Susan E. Erdman, Eric J. Alm

    Published in Microbiome (2025-08-01)
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  10. 10

    Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks. by Dmitry A Rodionov, Inna L Dubchak, Adam P Arkin, Eric J Alm, Mikhail S Gelfand

    Published in PLoS Computational Biology (2005-10-01)
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  11. 11

    Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia by Ana Paula Schaan, Amanda Vidal, An-Ni Zhang, Mathilde Poyet, Eric J. Alm, Mathieu Groussin, Ândrea Ribeiro-dos-Santos

    Published in mSystems (2024-03-01)
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  12. 12

    Point prevalence of SARS-CoV-2 infection among healthcare workers in March and June 2023 in Sweden by Kim Blom, Oscar Bladh, Sebastian Havervall, Ulrika Marking, Nina Greilert Norin, Jessica J. Alm, Jonas Klingström, Charlotte Thålin

    Published in The Lancet Regional Health. Europe (2023-10-01)
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  13. 13

    A new method for estimating carbon dioxide emissions from drained peatland forest soils for the greenhouse gas inventory of Finland by J. Alm, A. Wall, J.-P. Myllykangas, P. Ojanen, J. Heikkinen, H. M. Henttonen, R. Laiho, K. Minkkinen, T. Tuomainen, J. Mikola

    Published in Biogeosciences (2023-09-01)
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  14. 14

    Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome by Shane R. Byrne, Michael S. DeMott, Yifeng Yuan, Farzan Ghanegolmohammadi, Stefanie Kaiser, James G. Fox, Eric J. Alm, Peter C. Dedon

    Published in Microbiome (2025-03-01)
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  15. 15

    Contextualizing Wastewater-Based surveillance in the COVID-19 vaccination era by Federica Armas, Franciscus Chandra, Wei Lin Lee, Xiaoqiong Gu, Hongjie Chen, Amy Xiao, Mats Leifels, Stefan Wuertz, Eric J Alm, Janelle Thompson

    Published in Environment International (2023-01-01)
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  16. 16

    Wastewater network infrastructure in public health: Applications and learnings from the COVID-19 pandemic. by Nour Sharara, Noriko Endo, Claire Duvallet, Newsha Ghaeli, Mariana Matus, Jennings Heussner, Scott W Olesen, Eric J Alm, Peter R Chai, Timothy B Erickson

    Published in PLOS Global Public Health (2021-01-01)
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  17. 17

    Probiotic microbes sustain youthful serum testosterone levels and testicular size in aging mice. by Theofilos Poutahidis, Alex Springer, Tatiana Levkovich, Peimin Qi, Bernard J Varian, Jessica R Lakritz, Yassin M Ibrahim, Antonis Chatzigiagkos, Eric J Alm, Susan E Erdman

    Published in PLoS ONE (2014-01-01)
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  18. 18

    An immune-competent human gut microphysiological system enables inflammation-modulation by Faecalibacterium prausnitzii by Jianbo Zhang, Yu-Ja Huang, Martin Trapecar, Charles Wright, Kirsten Schneider, John Kemmitt, Victor Hernandez-Gordillo, Jun Young Yoon, Mathilde Poyet, Eric J. Alm, David T. Breault, David L. Trumper, Linda G. Griffith

    Published in npj Biofilms and Microbiomes (2024-03-01)
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  19. 19

    Rare coding variants in NOX4 link high ROS levels to psoriatic arthritis mutilans by Sailan Wang, Pernilla Nikamo, Leena Laasonen, Bjorn Gudbjornsson, Leif Ejstrup, Lars Iversen, Ulla Lindqvist, Jessica J Alm, Jesper Eisfeldt, Xiaowei Zheng, Sergiu-Bogdan Catrina, Fulya Taylan, Raquel Vaz, Mona Ståhle, Isabel Tapia-Paez

    Published in EMBO Molecular Medicine (2024-02-01)
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  20. 20

    Higher alpha diversity and Lactobacillus blooms are associated with better engraftment after fecal microbiota transplant in inflammatory bowel disease by Yanjia Jason Zhang, Athos Bousvaros, Michael Docktor, Abby L. Kaplan, Paul A. Rufo, McKenzie Leier, Madison Weatherly, Lori Zimmerman, Le Thanh Tu Nguyen, Brenda Barton, George Russell, Eric J. Alm, Stacy A. Kahn

    Published in Scientific Reports (2024-08-01)
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