Search Results - Jared Adolf-Bryfogle

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  1. 1

    The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite. by Jared Adolf-Bryfogle, Roland L Dunbrack

    Published in PLoS ONE (2013-01-01)
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  2. 2

    EGGNet, a Generalizable Geometric Deep Learning Framework for Protein Complex Pose Scoring by Zichen Wang, Ryan Brand, Jared Adolf-Bryfogle, Jasleen Grewal, Yanjun Qi, Steven A. Combs, Nataliya Golovach, Rebecca Alford, Huzefa Rangwala, Peter M. Clark

    Published in ACS Omega (2024-02-01)
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  3. 3

    Computational design of a neutralizing antibody with picomolar binding affinity for all concerning SARS-CoV-2 variants by Bo-Seong Jeong, Jeong Seok Cha, Insu Hwang, Uijin Kim, Jared Adolf-Bryfogle, Brian Coventry, Hyun-Soo Cho, Kyun-Do Kim, Byung-Ha Oh

    Published in mAbs (2022-12-01)
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  4. 4

    Applying computational protein design to therapeutic antibody discovery - current state and perspectives by Weronika Bielska, Weronika Bielska, Igor Jaszczyszyn, Igor Jaszczyszyn, Pawel Dudzic, Bartosz Janusz, Dawid Chomicz, Sonia Wrobel, Victor Greiff, Victor Greiff, Ryan Feehan, Jared Adolf-Bryfogle, Konrad Krawczyk

    Published in Frontiers in Immunology (2025-05-01)
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  5. 5

    Biochemical and structural characterization of two cif-like epoxide hydrolases from Burkholderia cenocepacia by Noor M. Taher, Kelli L. Hvorecny, Cassandra M. Burke, Morgan S.A. Gilman, Gary E. Heussler, Jared Adolf-Bryfogle, Christopher D. Bahl, George A. O'Toole, Dean R. Madden

    Published in Current Research in Structural Biology (2021-01-01)
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  6. 6

    Corrigendum to “Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntib... by Nancy E. Hernandez, Wojciech Jankowski, Rahel Frick, Simon P. Kelow, Joseph H. Lubin, Vijaya Simhadri, Jared Adolf-Bryfogle, Sagar D. Khare, Roland L. Dunbrack, Jr., Jeffrey J. Gray, Zuben E. Sauna

    Published in Heliyon (2023-08-01)
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  7. 7

    Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntibodyDesign (RAbD)... by Nancy E. Hernandez, Wojciech Jankowski, Rahel Frick, Simon P. Kelow, Joseph H. Lubin, Vijaya Simhadri, Jared Adolf-Bryfogle, Sagar D. Khare, Roland L. Dunbrack, Jr., Jeffrey J. Gray, Zuben E. Sauna

    Published in Heliyon (2023-04-01)
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  8. 8

    Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design. by Jared Adolf-Bryfogle, Jason W Labonte, John C Kraft, Maxim Shapovalov, Sebastian Raemisch, Thomas Lütteke, Frank DiMaio, Christopher D Bahl, Jesper Pallesen, Neil P King, Jeffrey J Gray, Daniel W Kulp, William R Schief

    Published in PLoS Computational Biology (2024-06-01)
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  9. 9

    Better together: Elements of successful scientific software development in a distributed collaborative community. by Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti, Andrew M Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland Dunbrack, Tanja Kortemme, Andrew Leaver-Fay, Charlie E M Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J Gray, Richard Bonneau

    Published in PLoS Computational Biology (2020-05-01)
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