Search Results - Jared T. Simpson

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  1. 1

    GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis by Hasindu Gamaarachchi, Chun Wai Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran

    Published in BMC Bioinformatics (2020-08-01)
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  2. 2

    Detecting Protein-DNA binding in single molecules using antibody guided methylation by Apoorva Thatavarty, Naor Sagy, Michael R. Erdos, Isac Lee, Jared T. Simpson, Winston Timp, Francis S. Collins, Daniel Z. Bar

    Published in Epigenetics & Chromatin (2025-07-01)
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  3. 3

    Trait variation in yeast is defined by population history. by Jonas Warringer, Enikö Zörgö, Francisco A Cubillos, Amin Zia, Arne Gjuvsland, Jared T Simpson, Annabelle Forsmark, Richard Durbin, Stig W Omholt, Edward J Louis, Gianni Liti, Alan Moses, Anders Blomberg

    Published in PLoS Genetics (2011-06-01)
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  4. 4

    Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada by Sandra Isabel, Mariana Abdulnoor, Karel Boissinot, Marc R. Isabel, Richard de Borja, Philip C. Zuzarte, Calvin P. Sjaarda, Kevin R. Barker, Prameet M. Sheth, Larissa M. Matukas, Jonathan B. Gubbay, Alisson J. McGeer, Samira Mubareka, Jared T. Simpson, Ramzi Fattouh

    Published in Scientific Reports (2022-06-01)
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  5. 5

    Author Correction: Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada by Sandra Isabel, Mariana Abdulnoor, Karel Boissinot, Marc R. Isabel, Richard de Borja, Philip C. Zuzarte, Calvin P. Sjaarda, Kevin R. Barker, Prameet M. Sheth, Larissa M. Matukas, Jonathan B. Gubbay, Allison J. McGeer, Samira Mubareka, Jared T. Simpson, Ramzi Fattouh

    Published in Scientific Reports (2022-08-01)
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  6. 6

    Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada by Calvin P. Sjaarda, Jennifer L. Guthrie, Samira Mubareka, Jared T. Simpson, Bettina Hamelin, Henry Wong, Leanne Mortimer, Robert Slinger, Andrew G. McArthur, Marc Desjardins, Allison McGeer, Tony Mazzulli, Katya Douchant, Danielle Brabant-Kirwan, Ramzi Fattouh, Aaron Campigotto, Samir N. Patel, Nahuel Fittipaldi, Robert I. Colautti, Prameet M. Sheth

    Published in mSphere (2021-06-01)
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  7. 7

    Inhibiting EZH2 targets atypical teratoid rhabdoid tumor by triggering viral mimicry via both RNA and DNA sensing pathways by Shengrui Feng, Sajid A. Marhon, Dustin J. Sokolowski, Alister D’Costa, Fraser Soares, Parinaz Mehdipour, Charles Ishak, Helen Loo Yau, Ilias Ettayebi, Parasvi S. Patel, Raymond Chen, Jiming Liu, Philip C. Zuzarte, King Ching Ho, Ben Ho, Shiyao Ning, Annie Huang, Cheryl H. Arrowsmith, Michael D. Wilson, Jared T. Simpson, Daniel D. De Carvalho

    Published in Nature Communications (2024-10-01)
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  8. 8

    Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples by Matthew H. Bailey, William U. Meyerson, Lewis Jonathan Dursi, Liang-Bo Wang, Guanlan Dong, Wen-Wei Liang, Amila Weerasinghe, Shantao Li, Yize Li, Sean Kelso, MC3 Working Group, PCAWG novel somatic mutation calling methods working group, Gordon Saksena, Kyle Ellrott, Michael C. Wendl, David A. Wheeler, Gad Getz, Jared T. Simpson, Mark B. Gerstein, Li Ding, PCAWG Consortium

    Published in Nature Communications (2020-11-01)
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  9. 9

    MinION Analysis and Reference Consortium: Phase 1 data release and analysis [version 1; referees: 2 approved] by Camilla L.C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David A. Eccles, Vadim Zalunin, John M. Urban, Paolo Piazza, Rory J. Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O'Grady, Hugh E. Olsen, MinION Analysis and Reference Consortium

    Published in F1000Research (2015-10-01)
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  10. 10

    Pathogenesis and transmission of SARS-CoV-2 D614G, Alpha, Gamma, Delta, and Omicron variants in golden hamsters by Andra Banete, Bryan D. Griffin, Juan C. Corredor, Emily Chien, Lily Yip, Tarini N. A. Gunawardena, Kuganya Nirmalarajah, Jady Liang, Yaejin Lee, Alexander Leacy, Sara Pagliarani, Richard de Borja, Winfield Yim, Hunsang Lee, Yu Onodera, Patryk Aftanas, Patrick Budylowski, Sang Kyun Ahn, Yanlong Pei, Hong Ouyang, Laura Kent, Xinliu Angel Li, Mario A. Ostrowski, Robert A. Kozak, Sarah K. Wootton, Natasha Christie-Holmes, Scott D. Gray-Owen, Mikko Taipale, Jared T. Simpson, Finlay Maguire, Allison J. McGeer, Haibo Zhang, Leonardo Susta, Theo J. Moraes, Samira Mubareka

    Published in npj Viruses (2025-02-01)
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