Search Results - Jennifer Pett-Ridge

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  1. 1

    Phylogenetic patterns in the microbial response to resource availability: amino acid incorporation in San Francisco Bay. by Xavier Mayali, Peter K Weber, Shalini Mabery, Jennifer Pett-Ridge

    Published in PLoS ONE (2014-01-01)
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  2. 2

    System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris by Ali Navid, Yongqin Jiao, Sergio Ernesto Wong, Jennifer Pett-Ridge

    Published in BMC Bioinformatics (2019-05-01)
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  3. 3

    Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development by Ella T. Sieradzki, Erin E. Nuccio, Jennifer Pett-Ridge, Mary K. Firestone

    Published in mSystems (2023-10-01)
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  4. 4

    The Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic Distribution by Rachel Hestrin, Marissa R. Lee, Briana K. Whitaker, Jennifer Pett-Ridge

    Published in Phytobiomes Journal (2021-03-01)
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  5. 5

    Measuring Cyanobacterial Metabolism in Biofilms with NanoSIMS Isotope Imaging and Scanning Electron Microscopy (SEM) by Rhona Stuart, Xavier Mayali, Michael Thelen, Jennifer Pett-Ridge, Peter Weber

    Published in Bio-Protocol (2017-05-01)
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  6. 6

    A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil by Alexa M. Nicolas, Ella T. Sieradzki, Jennifer Pett-Ridge, Jillian F. Banfield, Michiko E. Taga, Mary K. Firestone, Steven J. Blazewicz

    Published in Nature Communications (2023-09-01)
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  7. 7

    Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches by Mengting Maggie Yuan, Anne Kakouridis, Evan Starr, Nhu Nguyen, Shengjing Shi, Jennifer Pett-Ridge, Erin Nuccio, Jizhong Zhou, Mary Firestone

    Published in mBio (2021-04-01)
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  8. 8

    VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature by Olivier Zablocki, Michelle Michelsen, Marie Burris, Natalie Solonenko, Joanna Warwick-Dugdale, Romik Ghosh, Jennifer Pett-Ridge, Matthew B. Sullivan, Ben Temperton

    Published in PeerJ (2021-03-01)
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  9. 9

    Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat. by Jackson Z Lee, R Craig Everroad, Ulas Karaoz, Angela M Detweiler, Jennifer Pett-Ridge, Peter K Weber, Leslie Prufert-Bebout, Brad M Bebout

    Published in PLoS ONE (2018-01-01)
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  10. 10

    Quantitative stable isotope probing (qSIP) and cross-domain networks reveal bacterial-fungal interactions in the hyphosphere by Giovana S. Slanzon, Mengting Yuan, Katerina Estera-Molina, Aaron Chew, Steve J. Blazewicz, Michael Allen, Mary K. Firestone, Jennifer Pett-Ridge, Nhu H. Nguyen

    Published in Microbiome (2025-04-01)
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  11. 11

    Melanization slows the rapid movement of fungal necromass carbon and nitrogen into both bacterial and fungal decomposer communities and soils by François Maillard, Talia J. Michaud, Craig R. See, Lang C. DeLancey, Steven J. Blazewicz, Jeffrey A. Kimbrel, Jennifer Pett-Ridge, Peter G. Kennedy

    Published in mSystems (2023-08-01)
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  12. 12

    Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP by Anne E. Dekas, Anne E. Dekas, Alma E. Parada, Alma E. Parada, Xavier Mayali, Jed A. Fuhrman, Jessica Wollard, Peter K. Weber, Jennifer Pett-Ridge

    Published in Frontiers in Microbiology (2019-12-01)
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  13. 13

    Deep-rooted perennials alter microbial respiration and chemical composition of carbon in density fractions along soil depth profiles by Kyungjin Min, Erin Nuccio, Eric Slessarev, Megan Kan, Karis J. McFarlane, Erik Oerter, Anna Jurusik, Gregg Sanford, Kurt D Thelen, Jennifer Pett-Ridge, Asmeret Asefaw Berhe

    Published in Geoderma (2025-03-01)
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  14. 14

    Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm by Rhona K. Stuart, Xavier Mayali, Amy A. Boaro, Adam Zemla, R. Craig Everroad, Daniel Nilson, Peter K. Weber, Mary Lipton, Brad M. Bebout, Jennifer Pett-Ridge, Michael P. Thelen

    Published in mBio (2016-07-01)
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  15. 15

    HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi by Erin E. Nuccio, Steven J. Blazewicz, Marissa Lafler, Ashley N. Campbell, Anne Kakouridis, Jeffrey A. Kimbrel, Jessica Wollard, Dariia Vyshenska, Robert Riley, Andy Tomatsu, Rachel Hestrin, Rex R. Malmstrom, Mary Firestone, Jennifer Pett-Ridge

    Published in Microbiome (2022-11-01)
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  16. 16

    Terabase-Scale Coassembly of a Tropical Soil Microbiome by Robert Riley, Robert M. Bowers, Antonio Pedro Camargo, Ashley Campbell, Rob Egan, Emiley A. Eloe-Fadrosh, Brian Foster, Steven Hofmeyr, Marcel Huntemann, Matthew Kellom, Jeffrey A. Kimbrel, Leonid Oliker, Katherine Yelick, Jennifer Pett-Ridge, Asaf Salamov, Neha J. Varghese, Alicia Clum

    Published in Microbiology Spectrum (2023-08-01)
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  17. 17

    Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations by Anneliek M. ter Horst, Christian Santos-Medellín, Jackson W. Sorensen, Laura A. Zinke, Rachel M. Wilson, Eric R. Johnston, Gareth Trubl, Jennifer Pett-Ridge, Steven J. Blazewicz, Paul J. Hanson, Jeffrey P. Chanton, Christopher W. Schadt, Joel E. Kostka, Joanne B. Emerson

    Published in Microbiome (2021-12-01)
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  18. 18

    A standardized quantitative analysis strategy for stable isotope probing metagenomics by Dariia Vyshenska, Pranav Sampara, Kanwar Singh, Andy Tomatsu, W. Berkeley Kauffman, Erin E. Nuccio, Steven J. Blazewicz, Jennifer Pett-Ridge, Katherine B. Louie, Neha Varghese, Matthew Kellom, Alicia Clum, Robert Riley, Simon Roux, Emiley A. Eloe-Fadrosh, Ryan M. Ziels, Rex R. Malmstrom

    Published in mSystems (2023-08-01)
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  19. 19

    Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations by Anneliek M. ter Horst, Christian Santos-Medellín, Jackson W. Sorensen, Laura A. Zinke, Rachel M. Wilson, Eric R. Johnston, Gareth Trubl, Jennifer Pett-Ridge, Steven J. Blazewicz, Paul J. Hanson, Jeffrey P. Chanton, Christopher W. Schadt, Joel E. Kostka, Joanne B. Emerson

    Published in Microbiome (2022-01-01)
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  20. 20

    Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems by Alex Greenlon, Ella Sieradzki, Olivier Zablocki, Benjamin J. Koch, Megan M. Foley, Jeffrey A. Kimbrel, Bruce A. Hungate, Steven J. Blazewicz, Erin E. Nuccio, Christine L. Sun, Aaron Chew, Cynthia-Jeanette Mancilla, Matthew B. Sullivan, Mary Firestone, Jennifer Pett-Ridge, Jillian F. Banfield

    Published in mSystems (2022-12-01)
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