Search Results - John R. Yates

John R. Yates

John R. Yates III is an American chemist and Ernest W. Hahn Professor in the Departments of Molecular Medicine and Neurobiology at The Scripps Research Institute in La Jolla, California. He is currently editor-in-chief of the Journal of Proteome Research. He appeared on list of 2022, 2023 and 2024 Highly Cited Researchers, making him among the top one percent of most cited researchers in the world.

His work is focused on developing tools and in proteomics and he specializes in mass spectrometry. He is best known for the development of the Sequest algorithm for automated peptide sequencing and Multidimensional Protein Identification Technology (MudPIT) and data-independent acquisition. His lab is known for its contribution to methods to identify structural changes in proteins in living cells as well as method to identify N-glycan processing and occupancy using mass spectrometry such as covalent protein painting, and DeGlyPHER (Deglycosylation-dependent Glycan/Proteomic Heterogeneity Evaluation Report). His laboratory has made important contributions to understanding the biochemical mechanisms behind the failure of △F508 cystic fibrosis ion transport regulator to mature. Provided by Wikipedia
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  1. 1

    The power of mass spectrometry in biological discovery <subtitle>Mass Spectrometry For Proteomics Analysis</subtitle> by John R. Yates

    Published in BioTechniques (2006-06-01)
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  2. 2

    Mass Spectrometry as an Emerging Tool for Systems Biology by John R. Yates

    Published in BioTechniques (2004-06-01)
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  3. 3

    Recent technical advances in proteomics [version 1; peer review: 2 approved] by John R. Yates, III

    Published in F1000Research (2019-03-01)
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  4. 4

    Multidimensional Separations for Protein/Peptide Analysis in the Post-Genomic Era by Hongbin Liu, Dayin Lin, John R. Yates

    Published in BioTechniques (2002-04-01)
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  5. 5

    Application of thermoelastic stress analysis for the experimental evaluation of the effective stress intensity factor by Francisco A. Díaz, Eann A. Patterson, John R. Yates

    Published in Fracture and Structural Integrity (2013-04-01)
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  6. 6

    Application of thermoelastic stress analysis for the experimental evaluation of the effective stress intensity factor by Francisco A. Díaz, Eann A. Patterson, John R. Yates

    Published in Fracture and Structural Integrity (2013-07-01)
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  7. 7

    From Synapse to Function: A Perspective on the Role of Neuroproteomics in Elucidating Mechanisms of Drug Addiction by Luis A. Natividad, Matthew W. Buczynski, Daniel B. McClatchy, John R. Yates

    Published in Proteomes (2018-12-01)
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  8. 8

    Proteomic analysis identifies highly expressed plasma membrane proteins for detection and therapeutic targeting of specific breast cancer subtypes by Yvonne S. Ziegler, James J. Moresco, Patricia G. Tu, John R. Yates, Ann M. Nardulli

    Published in Clinical Proteomics (2018-09-01)
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  9. 9

    Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator by Renata Usaite, Michael C Jewett, Ana Paula Oliveira, John R Yates, Lisbeth Olsson, Jens Nielsen

    Published in Molecular Systems Biology (2009-11-01)
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  10. 10

    Mitotic spindle proteomics in Chinese hamster ovary cells. by Mary Kate Bonner, Daniel S Poole, Tao Xu, Ali Sarkeshik, John R Yates, Ahna R Skop

    Published in PLoS ONE (2011-01-01)
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  11. 11

    Analysis of URI nuclear interaction with RPB5 and components of the R2TP/prefoldin-like complex. by Paolo Mita, Jeffrey N Savas, Susan Ha, Nabil Djouder, John R Yates, Susan K Logan

    Published in PLoS ONE (2013-01-01)
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  12. 12

    The FEAR protein Slk19 restricts Cdc14 phosphatase to the nucleus until the end of anaphase, regulating its participation in mitotic exit in Saccharomyces cerevisiae. by Ann Marie E Faust, Catherine C L Wong, John R Yates, David G Drubin, Georjana Barnes

    Published in PLoS ONE (2013-01-01)
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  13. 13

    Differential proteomic analysis of mammalian tissues using SILAM. by Daniel B McClatchy, Lujian Liao, Sung Kyu Park, Tao Xu, Bingwen Lu, John R Yates Iii

    Published in PLoS ONE (2011-01-01)
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  14. 14

    Phosphorylation-dependent interactions between Crb2 and Chk1 are essential for DNA damage checkpoint. by Meng Qu, Bing Yang, Li Tao, John R Yates, Paul Russell, Meng-Qiu Dong, Li-Lin Du

    Published in PLoS Genetics (2012-07-01)
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  15. 15

    Cleavage of the SUN-domain protein Mps3 at its N-terminus regulates centrosome disjunction in budding yeast meiosis. by Ping Li, Hui Jin, Bailey A Koch, Rebecca L Abblett, Xuemei Han, John R Yates, Hong-Guo Yu

    Published in PLoS Genetics (2017-06-01)
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  16. 16

    Using in vivo intact structure for system-wide quantitative analysis of changes in proteins by Ahrum Son, Hyunsoo Kim, Jolene K. Diedrich, Casimir Bamberger, Daniel B. McClatchy, Stuart A. Lipton, John R. Yates

    Published in Nature Communications (2024-10-01)
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  17. 17

    Borrelia burgdorferi infection modifies protein content in saliva of Ixodes scapularis nymphs by Tae Kwon Kim, Lucas Tirloni, Emily Bencosme-Cuevas, Tae Heung Kim, Jolene K. Diedrich, John R. Yates, Albert Mulenga

    Published in BMC Genomics (2021-03-01)
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  18. 18

    Correction: Interactome analysis of the lymphocytic choriomeningitis virus nucleoprotein in infected cells reveals ATPase Na+/K+ transporting subunit Alpha 1 and prohibitin as host... by Masaharu Iwasaki, Petra Minder, Yíngyún Caì, Jens H Kuhn, John R Yates, Bruce E Torbett, Juan C de la Torre

    Published in PLoS Pathogens (2020-01-01)
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  19. 19

    Mocetinostat activates Krüppel-like factor 4 and protects against tissue destruction and inflammation in osteoarthritis by Manabu Kawata, Daniel B. McClatchy, Jolene K. Diedrich, Merissa Olmer, Kristen A. Johnson, John R. Yates, Martin K. Lotz

    Published in JCI Insight (2023-09-01)
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  20. 20

    SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy. by Muyu Xu, James J Moresco, Max Chang, Amey Mukim, Davey Smith, Jolene K Diedrich, John R Yates, Katherine A Jones

    Published in PLoS Pathogens (2018-05-01)
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