Search Results - Joseph Beechem
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Modeling bi-modality improves characterization of cell cycle on gene expression in single cells. by Andrew McDavid, Lucas Dennis, Patrick Danaher, Greg Finak, Michael Krouse, Alice Wang, Philippa Webster, Joseph Beechem, Raphael Gottardo
Published in PLoS Computational Biology (2014-07-01)Get full text
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86 Reveal spatial signatures of tumor microenvironment and oncogenic pathways using 6,000-plex single-cell spatial molecular imaging on FFPE tissue by Patrick Danaher, Joseph Beechem, Jason Reeves, Shanshan He, Michael Rhodes, Mark Gregory, Michael Patrick, Julian Preciado, David Kroeppler, Olivia Ho-shing, Haiyan Zhai
Published in Journal for ImmunoTherapy of Cancer (2023-11-01)Article -
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113 A single-cell spatially resolved atlas of immune-mediated control of lung adenocarcinoma by Joseph Beechem, Shanshan He, Silvio Bicciato, Michael Patrick, Margaret Hoang, Tito Panciera, Francesca Zanconato, Michelangelo Cordenonsi, Mattia Forcato, Giada Vanni, Julian Preciado, Saskia Ilcisin, Katrina Raay, Stefano Piccolo
Published in Journal for ImmunoTherapy of Cancer (2023-11-01)Article -
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120 Human immuno-oncology proteome atlas enables a holistic proteomic approach for spatial biology discovery in FFPE tissues by Mark Conner, Joseph Beechem, Gary Geiss, Eduardo Ignacio, Alyssa Rosenbloom, Shilah Bonnett, Brian Filanoski, Rhonda Meredith, Hye Son Yi, Erin Piazza, Christine Kang, Lesley Isgur, Margaret Hoang, Lori Hamanishi, Nadine Nelson, Michael Prater
Published in Journal for ImmunoTherapy of Cancer (2023-11-01)Article -
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207 The spatially-resolved proteomic atlas of the tumor immune architecture of HER2-positive breast cancer and response to neoadjuvant anti-HER2 therapy-based chemotherapy by Yi Liu, Mark Conner, Joseph Beechem, Gary Geiss, Saranya Chumsri, Alyssa Rosenbloom, Shilah Bonnett, Brian Filanoski, Rhonda Meredith, Erin Piazza, Christine Kang, Jennifer Kachergus, Ji Shi, Yaohua Ma, Lesley Isgur, Margaret Hoang, EA Thompson
Published in Journal for ImmunoTherapy of Cancer (2023-11-01)Article -
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A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients by Yered Pita-Juarez, Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni M. Delorey, Adam L. Essene, Olga R. Brook, Deepti Pant, Disha Skelton-Badlani, Pourya Naderi, Pinzhu Huang, Liuliu Pan, Tyler Hether, Tallulah S. Andrews, Carly G. K. Ziegler, Jason Reeves, Andriy Myloserdnyy, Rachel Chen, Andy Nam, Stefan Phelan, Yan Liang, Mark Gregory, Shanshan He, Michael Patrick, Tushar Rane, Aster Wardhani, Amit Dipak Amin, Jana Biermann, Hanina Hibshoosh, Molly Veregge, Zachary Kramer, Christopher Jacobs, Yusuf Yalcin, Devan Phillips, Michal Slyper, Ayshwarya Subramanian, Orr Ashenberg, Zohar Bloom-Ackermann, Victoria M. Tran, James Gomez, Alexander Sturm, Shuting Zhang, Stephen J. Fleming, Sarah Warren, Joseph Beechem, Deborah Hung, Mehrtash Babadi, Robert F. Padera, Sonya A. MacParland, Gary D. Bader, Nasser Imad, Isaac H. Solomon, Eric Miller, Stefan Riedel, Caroline B. M. Porter, Alexandra-Chloé Villani, Linus T.-Y. Tsai, Winston Hide, Gyongyi Szabo, Jonathan Hecht, Orit Rozenblatt-Rosen, Alex K. Shalek, Benjamin Izar, Aviv Regev, Yury V. Popov, Z. Gordon Jiang, Ioannis S. Vlachos
Published in Genome Biology (2025-03-01)Get full text
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