Search Results - Justin P. Shaffer

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  1. 1

    Soil-borne fungi influence seed germination and mortality, with implications for coexistence of desert winter annual plants. by Yue M Li, Justin P Shaffer, Brenna Hall, Hongseok Ko

    Published in PLoS ONE (2019-01-01)
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  2. 2

    Transcriptional Profiles of a Foliar Fungal Endophyte (Pestalotiopsis, Ascomycota) and Its Bacterial Symbiont (Luteibacter, Gammaproteobacteria) Reveal Sulfur Exchange and Growth R... by Justin P. Shaffer, Morgan E. Carter, Joseph E. Spraker, Meara Clark, Brian A. Smith, Kevin L. Hockett, David A. Baltrus, A. Elizabeth Arnold

    Published in mSystems (2022-04-01)
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  3. 3

    A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities by Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight

    Published in BioTechniques (2022-06-01)
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  4. 4

    Postnatal exposure to ambient air pollutants is associated with the composition of the infant gut microbiota at 6-months of age by Maximilian J. Bailey, Elizabeth A. Holzhausen, Zachariah E. M. Morgan, Noopur Naik, Justin P. Shaffer, Donghai Liang, Howard H. Chang, Jeremy Sarnat, Shan Sun, Paige K. Berger, Kelsey A. Schmidt, Frederick Lurmann, Michael I. Goran, Tanya L. Alderete

    Published in Gut Microbes (2022-12-01)
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  5. 5

    A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities by Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob Knight

    Published in BioTechniques (2021-03-01)
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  6. 6

    Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases by George Armstrong, Cameron Martino, Justin Morris, Behnam Khaleghi, Jaeyoung Kang, Jeff DeReus, Qiyun Zhu, Daniel Roush, Daniel McDonald, Antonio Gonazlez, Justin P. Shaffer, Carolina Carpenter, Mehrbod Estaki, Stephen Wandro, Sean Eilert, Ameen Akel, Justin Eno, Ken Curewitz, Austin D. Swafford, Niema Moshiri, Tajana Rosing, Rob Knight

    Published in mSystems (2022-04-01)
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  7. 7

    Peripheral neuronal activation shapes the microbiome and alters gut physiology by Jessica A. Griffiths, Bryan B. Yoo, Peter Thuy-Boun, Victor J. Cantu, Kelly C. Weldon, Collin Challis, Michael J. Sweredoski, Ken Y. Chan, Taren M. Thron, Gil Sharon, Annie Moradian, Gregory Humphrey, Qiyun Zhu, Justin P. Shaffer, Dennis W. Wolan, Pieter C. Dorrestein, Rob Knight, Viviana Gradinaru, Sarkis K. Mazmanian

    Published in Cell Reports (2024-04-01)
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  8. 8

    Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy by Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D. Sepich-Poore, Austin D. Swafford, Promi Das, Justin P. Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S. Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A. Gilbert, Rob Knight

    Published in mSystems (2022-04-01)
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  9. 9

    Correction for Zhu et al., “Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy” by Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D. Sepich-Poore, Austin D. Swafford, Promi Das, Justin P. Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S. Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A. Gilbert, Rob Knight

    Published in mSystems (2024-11-01)
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