Search Results - Lars Barquist

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  1. 1

    Plugging Small RNAs into the Network by Lars Barquist

    Published in mSystems (2020-06-01)
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  2. 2

    A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria by Geraldine J. Sullivan, Lars Barquist, Amy K. Cain

    Published in mSystems (2024-04-01)
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  3. 3

    Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads by Christina Homberger, Regan J. Hayward, Lars Barquist, Jörg Vogel

    Published in mBio (2023-04-01)
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  4. 4

    Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress by Kilian Schumacher, Rick Gelhausen, Willow Kion-Crosby, Lars Barquist, Rolf Backofen, Kirsten Jung

    Published in mSystems (2023-12-01)
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  5. 5

    An antisense oligomer conjugate with unpredicted bactericidal activity against Fusobacterium nucleatum by Valentina Cosi, Jakob Jung, Linda Popella, Falk Ponath, Chandradhish Ghosh, Lars Barquist, Jörg Vogel

    Published in mBio (2025-06-01)
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  6. 6

    Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequen... by Kotaro Chihara, Thorsten Bischler, Lars Barquist, Vivian A. Monzon, Naohiro Noda, Jörg Vogel, Satoshi Tsuneda

    Published in mSystems (2019-12-01)
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  7. 7

    Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli by Yael Yair, Charlotte Michaux, Dvora Biran, Jörg Bernhard, Jörg Vogel, Lars Barquist, Eliora Z. Ron

    Published in mSystems (2022-08-01)
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  8. 8

    Evolutionary modeling and prediction of non-coding RNAs in Drosophila. by Robert K Bradley, Andrew V Uzilov, Mitchell E Skinner, Yuri R Bendaña, Lars Barquist, Ian Holmes

    Published in PLoS ONE (2009-08-01)
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  9. 9

    Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration by Yanying Yu, Sandra Gawlitt, Lisa Barros de Andrade e Sousa, Erinc Merdivan, Marie Piraud, Chase L. Beisel, Lars Barquist

    Published in Genome Biology (2024-01-01)
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  10. 10

    The conserved noncoding RNA ModT coordinates growth and virulence in Clostridioides difficile. by Tina Lenče, Johannes Sulzer, Kilian Andress, Anne-Sophie Gribling-Burrer, Vanessa Lamm-Schmidt, Lars Barquist, Redmond P Smyth, Franziska Faber

    Published in PLoS Biology (2024-12-01)
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  11. 11

    The in vitro and in vivo effects of constitutive light expression on a bioluminescent strain of the mouse enteropathogen Citrobacter rodentium by Hannah M. Read, Grant Mills, Sarah Johnson, Peter Tsai, James Dalton, Lars Barquist, Cristin G. Print, Wayne M. Patrick, Siouxsie Wiles

    Published in PeerJ (2016-06-01)
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  12. 12

    The global RNA-binding protein RbpB is a regulator of polysaccharide utilization in Bacteroides thetaiotaomicron by Ann-Sophie Rüttiger, Daniel Ryan, Luisella Spiga, Vanessa Lamm-Schmidt, Gianluca Prezza, Sarah Reichardt, Madison Langford, Lars Barquist, Franziska Faber, Wenhan Zhu, Alexander J. Westermann

    Published in Nature Communications (2025-01-01)
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  13. 13

    Low-input RNA-seq suggests metabolic specialization underlying morphological heterogeneity in a gut commensal bacterium by Elise Bornet, Gianluca Prezza, Laura Cecchino, Laura Jenniches, Jochen Behrends, Caroline Tawk, Kerwyn Casey Huang, Till Strowig, Jörg Vogel, Lars Barquist, Antoine-Emmanuel Saliba, Alexander J. Westermann

    Published in Cell Reports (2025-06-01)
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  14. 14

    Vector-borne Trypanosoma brucei parasites develop in artificial human skin and persist as skin tissue forms by Christian Reuter, Laura Hauf, Fabian Imdahl, Rituparno Sen, Ehsan Vafadarnejad, Philipp Fey, Tamara Finger, Nicola G. Jones, Heike Walles, Lars Barquist, Antoine-Emmanuel Saliba, Florian Groeber-Becker, Markus Engstler

    Published in Nature Communications (2023-11-01)
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  15. 15

    Rapid transcriptional responses to serum exposure are associated with sensitivity and resistance to antibody-mediated complement killing in invasive Salmonella Typhimurium ST313 [v... by Edna M. Ondari, Elizabeth J. Klemm, Chisomo L. Msefula, Moataz Abd El Ghany, Jennifer N. Heath, Derek J. Pickard, Lars Barquist, Gordon Dougan, Robert A. Kingsley, Calman A. MacLennan

    Published in Wellcome Open Research (2019-04-01)
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  16. 16

    High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality by Fatemeh A. Ghomi, Jakob J. Jung, Gemma C. Langridge, Amy K. Cain, Christine J. Boinett, Moataz Abd El Ghany, Derek J. Pickard, Robert A. Kingsley, Nicholas R. Thomson, Julian Parkhill, Paul P. Gardner, Lars Barquist

    Published in mBio (2024-10-01)
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  17. 17

    Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa. by Chinyere K Okoro, Lars Barquist, Thomas R Connor, Simon R Harris, Simon Clare, Mark P Stevens, Mark J Arends, Christine Hale, Leanne Kane, Derek J Pickard, Jennifer Hill, Katherine Harcourt, Julian Parkhill, Gordon Dougan, Robert A Kingsley

    Published in PLoS Neglected Tropical Diseases (2015-03-01)
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  18. 18

    Characterization of the yehUT two-component regulatory system of Salmonella enterica Serovar Typhi and Typhimurium. by Vanessa K Wong, Derek J Pickard, Lars Barquist, Karthikeyan Sivaraman, Andrew J Page, Peter J Hart, Mark J Arends, Kathryn E Holt, Leanne Kane, Lynda F Mottram, Louise Ellison, Ruben Bautista, Chris J McGee, Sally J Kay, Thomas M Wileman, Linda J Kenney, Calman A MacLennan, Robert A Kingsley, Gordon Dougan

    Published in PLoS ONE (2013-01-01)
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