Search Results - Lydia M Contreras

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  1. 1

    Identification and Characterization of 5′ Untranslated Regions (5′UTRs) in Zymomonas mobilis as Regulatory Biological Parts by Seung Hee Cho, Katie Haning, Wei Shen, Cameron Blome, Runxia Li, Shihui Yang, Lydia M. Contreras, Lydia M. Contreras

    Published in Frontiers in Microbiology (2017-12-01)
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  2. 2

    Optimizing metabolite production using periodic oscillations. by Steven W Sowa, Michael Baldea, Lydia M Contreras

    Published in PLoS Computational Biology (2014-06-01)
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  3. 3

    PNPase and RhlB Interact and Reduce the Cellular Availability of Oxidized RNA in Deinococcus radiodurans by Runhua Han, Jessie Jiang, Jaden Fang, Lydia M. Contreras

    Published in Microbiology Spectrum (2022-08-01)
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  4. 4

    Optimized chemical labeling method for isolation of 8-oxoG-modified RNA, ChLoRox-Seq, identifies mRNAs enriched in oxidation and transcriptome-wide distribution biases of oxidation... by Matthew R. Burroughs, Philip J. Sweet, Lydia M. Contreras

    Published in RNA Biology (2024-12-01)
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  5. 5

    Characterization of epitranscriptome reader proteins experimentally and in silico: Current knowledge and future perspectives beyond the YTH domain by Lucas G. Miller, Madeline Demny, Phanourios Tamamis, Lydia M. Contreras

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  6. 6

    Multiple Small RNAs Interact to Co-regulate Ethanol Tolerance in Zymomonas mobilis by Runhua Han, Katie Haning, Juan C. Gonzalez-Rivera, Yongfu Yang, Runxia Li, Seung Hee Cho, Ju Huang, Bobi A. Simonsen, Shihui Yang, Lydia M. Contreras, Lydia M. Contreras

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  7. 7

    CsrA selectively modulates sRNA-mRNA regulator outcomes by Alejandra Matsuri Rojano-Nisimura, Trevor R. Simmons, Abigail N. Leistra, Mia K. Mihailovic, Ryan Buchser, Alyssa M. Ekdahl, Isabella Joseph, Nicholas C. Curtis, Lydia M. Contreras, Lydia M. Contreras

    Published in Frontiers in Molecular Biosciences (2023-11-01)
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  8. 8

    The Post-Transcriptional Regulatory Protein CsrA Amplifies Its Targetome through Direct Interactions with Stress-Response Regulatory Hubs: The EvgA and AcnA Cases by Alejandra Matsuri Rojano-Nisimura, Kobe B. Grismore, Josie S. Ruzek, Jacqueline L. Avila, Lydia M. Contreras

    Published in Microorganisms (2024-03-01)
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  9. 9

    A strategy to quantify myofibroblast activation on a continuous spectrum by Alexander Hillsley, Matthew S. Santoso, Sean M. Engels, Kathleen N. Halwachs, Lydia M. Contreras, Adrianne M. Rosales

    Published in Scientific Reports (2022-07-01)
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  10. 10

    Rewiring native post-transcriptional global regulators to achieve designer, multi-layered genetic circuits by Trevor R. Simmons, Gina Partipilo, Ryan Buchser, Anna C. Stankes, Rashmi Srivastava, Darian Chiu, Benjamin K. Keitz, Lydia M. Contreras

    Published in Nature Communications (2024-10-01)
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  11. 11

    A high-throughput search for intracellular factors that affect RNA folding identifies E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodelling by Alejandra Matsuri Rojano-Nisimura, Lucas G. Miller, Aparna Anantharaman, Aaron T. Middleton, Elroi Kibret, Sung H. Jung, Rick Russell, Lydia M. Contreras

    Published in RNA Biology (2024-12-01)
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  12. 12

    High-Throughput Microfluidic Technologies for Rapidly Screening Pollutant-Induced Cell Health Effects by Blanca I. Quiñones-Díaz, Niphattha Wongwiset, Pratik Kamat, Orian Stapleton, Sean M. Engels, Matthew R. Burroughs, S. V. Sreenivasan, Jude M. Phillip, Lydia M. Contreras

    Published in ACS Bio & Med Chem Au (2025-08-01)
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  13. 13

    Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study by Mia K. Mihailovic, Alyssa M. Ekdahl, Angela Chen, Abigail N. Leistra, Bridget Li, Javier González Martínez, Matthew Law, Cindy Ejindu, Éric Massé, Peter L. Freddolino, Lydia M. Contreras

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  14. 14

    Thermodynamic modeling of RsmA - mRNA interactions capture novel direct binding across the Pseudomonas aeruginosa transcriptome by Alexandra J. Lukasiewicz, Abigail N. Leistra, Lily Hoefner, Erika Monzon, Cindy J. Gode, Bryan T. Zorn, Kayley H. Janssen, Timothy L. Yahr, Timothy L. Yahr, Matthew C. Wolfgang, Matthew C. Wolfgang, Lydia M. Contreras

    Published in Frontiers in Molecular Biosciences (2025-02-01)
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