Search Results - Magnus Rattray

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  1. 1

    Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes. by Nick E Phillips, Cerys Manning, Nancy Papalopulu, Magnus Rattray

    Published in PLoS Computational Biology (2017-05-01)
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  2. 2

    OscoNet: inferring oscillatory gene networks by Luisa Cutillo, Alexis Boukouvalas, Elli Marinopoulou, Nancy Papalopulu, Magnus Rattray

    Published in BMC Bioinformatics (2020-08-01)
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  3. 3

    A model of k-mer surprisal to quantify local sequence information content surrounding splice regions by Sam Humphrey, Alastair Kerr, Magnus Rattray, Caroline Dive, Crispin J. Miller

    Published in PeerJ (2020-11-01)
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  4. 4

    Evolutionary systems biology of amino acid biosynthetic cost in yeast. by Michael D Barton, Daniela Delneri, Stephen G Oliver, Magnus Rattray, Casey M Bergman

    Published in PLoS ONE (2010-08-01)
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  5. 5

    Combined modelling of mRNA decay dynamics and single-molecule imaging in the Drosophila embryo uncovers a role for P-bodies in 5' to 3' degradation. by Lauren Forbes Beadle, Jennifer C Love, Yuliya Shapovalova, Artem Artemev, Magnus Rattray, Hilary L Ashe

    Published in PLoS Biology (2023-01-01)
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  6. 6

    Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data by Tomasz Dzida, Mudassar Iqbal, Iryna Charapitsa, George Reid, Henk Stunnenberg, Filomena Matarese, Korbinian Grote, Antti Honkela, Magnus Rattray

    Published in PeerJ (2017-09-01)
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  7. 7

    Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. by Darren M Soanes, Intikhab Alam, Mike Cornell, Han Min Wong, Cornelia Hedeler, Norman W Paton, Magnus Rattray, Simon J Hubbard, Stephen G Oliver, Nicholas J Talbot

    Published in PLoS ONE (2008-06-01)
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  8. 8

    A systems immunology approach to investigate cytokine responses to viruses and bacteria and their association with disease by Lijing Lin, John A. Curtin, Eteri Regis, Aurica Hirsman, Rebecca Howard, Mauro Tutino, Michael R. Edwards, Mattia Prosperi, Angela Simpson, Magnus Rattray, Adnan Custovic, Sebastian L. Johnston

    Published in Scientific Reports (2022-08-01)
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  9. 9

    C9ORF72 GGGGCC Expanded Repeats Produce Splicing Dysregulation which Correlates with Disease Severity in Amyotrophic Lateral Sclerosis. by Johnathan Cooper-Knock, Joanna J Bury, Paul R Heath, Matthew Wyles, Adrian Higginbottom, Catherine Gelsthorpe, J Robin Highley, Guillaume Hautbergue, Magnus Rattray, Janine Kirby, Pamela J Shaw

    Published in PLoS ONE (2015-01-01)
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  10. 10

    Distinct Cohorts of Aspergillus fumigatus Transcription Factors Are Required for Epithelial Damage Occurring via Contact- or Soluble Effector-Mediated Mechanisms by Sayema Rahman, Norman van Rhijn, Panagiotis Papastamoulis, Darren D. Thomson, Darren D. Thomson, Zorana Carter, Rachael Fortune-Grant, Magnus Rattray, Michael John Bromley, Elaine Bignell, Elaine Bignell

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  11. 11

    Identification of differences in CD4+ T-cell gene expression between people with asthma and healthy controls by Mauro Tutino, Jenny Hankinson, Clare Murray, Lesley Lowe, Gina Kerry, Magnus Rattray, Adnan Custovic, Sebastian L. Johnston, Chenfu Shi, Gisela Orozco, Stephen Eyre, Paul Martin, Angela Simpson, John A. Curtin

    Published in Scientific Reports (2023-12-01)
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  12. 12

    Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation by Nick E Phillips, Cerys S Manning, Tom Pettini, Veronica Biga, Elli Marinopoulou, Peter Stanley, James Boyd, James Bagnall, Pawel Paszek, David G Spiller, Michael RH White, Marc Goodfellow, Tobias Galla, Magnus Rattray, Nancy Papalopulu

    Published in eLife (2016-10-01)
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  13. 13

    Rheumatoid arthritis reprograms circadian output pathways by Toryn M. Poolman, Julie Gibbs, Amy L. Walker, Suzanna Dickson, Laura Farrell, James Hensman, Alexandra C. Kendall, Robert Maidstone, Stacey Warwood, Andrew Loudon, Magnus Rattray, Ian N. Bruce, Anna Nicolaou, David W. Ray

    Published in Arthritis Research & Therapy (2019-02-01)
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  14. 14

    Multi-omics analysis in primary T cells elucidates mechanisms behind disease-associated genetic loci by Chenfu Shi, Danyun Zhao, Jake Butler, Antonios Frantzeskos, Stefano Rossi, James Ding, Carlo Ferrazzano, Charlotte Wynn, Ryan Malcolm Hum, Ellie Richards, Muskan Gupta, Khadijah Patel, Chuan Fu Yap, Darren Plant, Richard Grencis, Paul Martin, Antony Adamson, Stephen Eyre, John Bowes, Anne Barton, Pauline Ho, Magnus Rattray, Gisela Orozco

    Published in Genome Biology (2025-02-01)
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  15. 15

    Spatial gene regulatory networks driving cell state transitions during human liver disease by Nigel L Hammond, Syed Murtuza Baker, Sokratia Georgaka, Ali Al-Anbaki, Elliot Jokl, Kara Simpson, Rosa Sanchez-Alvarez, Varinder S Athwal, Huw Purssell, Ajith K Siriwardena, Harry V M Spiers, Mike J Dixon, Leoma D Bere, Adam P Jones, Michael J Haley, Kevin N Couper, Nicoletta Bobola, Andrew D Sharrocks, Neil A Hanley, Magnus Rattray, Karen Piper Hanley

    Published in EMBO Molecular Medicine (2025-04-01)
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