Search Results - Marcus J. Claesson

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  1. 1

    Editorial: Microbiome and Machine Learning by Isabel Moreno-Indias, Isabel Moreno-Indias, Aldert L. Zomer, David Gómez-Cabrero, David Gómez-Cabrero, Marcus J. Claesson, Marcus J. Claesson

    Published in Frontiers in Microbiology (2022-07-01)
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  2. 2

    Interactions between Medications and the Gut Microbiome in Inflammatory Bowel Disease by Julia Eckenberger, James C. Butler, Charles N. Bernstein, Fergus Shanahan, Marcus J. Claesson

    Published in Microorganisms (2022-10-01)
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  3. 3

    Species classifier choice is a key consideration when analysing low-complexity food microbiome data by Aaron M. Walsh, Fiona Crispie, Orla O’Sullivan, Laura Finnegan, Marcus J. Claesson, Paul D. Cotter

    Published in Microbiome (2018-03-01)
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  4. 4

    Impact of dietary chitosan on host immune response and gut microbiome composition in a Listeria monocytogenes high-fat diet murine infection model by Monica Cazzaniga, Darja Flegar, Kardokh Kaka Bra, Miguel Villoria Recio, Cara Hueston, Marcus J. Claesson, Cormac G.M. Gahan

    Published in Journal of Functional Foods (2025-11-01)
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  5. 5

    Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir by Aaron M. Walsh, Fiona Crispie, Kieran Kilcawley, Orla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter

    Published in mSystems (2016-10-01)
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  6. 6

    Improved gut microbiome recovery following drug therapy is linked to abundance and replication of probiotic strains by Jamie FitzGerald, Shriram Patel, Julia Eckenberger, Eric Guillemard, Patrick Veiga, Florent Schäfer, Jens Walter, Marcus J Claesson, Muriel Derrien

    Published in Gut Microbes (2022-12-01)
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  7. 7

    Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile Lactobacilli. by B Anne Neville, Brian M Forde, Marcus J Claesson, Trevor Darby, Avril Coghlan, Kenneth Nally, R Paul Ross, Paul W O'Toole

    Published in PLoS ONE (2012-01-01)
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  8. 8

    Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences by Nicole R. Narayan, Thomas Weinmaier, Emilio J. Laserna-Mendieta, Marcus J. Claesson, Fergus Shanahan, Karim Dabbagh, Shoko Iwai, Todd Z. DeSantis

    Published in BMC Genomics (2020-01-01)
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  9. 9

    Correction to: Piphillin predicts metagenomic composition and dynamics from DADA2- corrected 16S rDNA sequences by Nicole R. Narayan, Thomas Weinmaier, Emilio J. Laserna-Mendieta, Marcus J. Claesson, Fergus Shanahan, Karim Dabbagh, Shoko Iwai, Todd Z. DeSantis

    Published in BMC Genomics (2020-01-01)
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  10. 10

    Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets by Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert L. Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim

    Published in mSystems (2021-08-01)
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  11. 11

    Machine learning approaches in microbiome research: challenges and best practices by Georgios Papoutsoglou, Georgios Papoutsoglou, Sonia Tarazona, Marta B. Lopes, Marta B. Lopes, Thomas Klammsteiner, Thomas Klammsteiner, Eliana Ibrahimi, Julia Eckenberger, Julia Eckenberger, Pierfrancesco Novielli, Pierfrancesco Novielli, Alberto Tonda, Alberto Tonda, Andrea Simeon, Rajesh Shigdel, Stéphane Béreux, Stéphane Béreux, Giacomo Vitali, Sabina Tangaro, Sabina Tangaro, Leo Lahti, Andriy Temko, Marcus J. Claesson, Marcus J. Claesson, Magali Berland

    Published in Frontiers in Microbiology (2023-09-01)
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  12. 12

    Comparison of the relative impacts of acute consumption of an inulin-enriched diet, milk kefir or a commercial probiotic product on the human gut microbiome and metabolome by Liam H. Walsh, Aaron M. Walsh, Isabel Garcia-Perez, Fiona Crispie, Adele Costabile, Richard Ellis, Jim Finlayson, Laura A. Finnegan, Marcus J. Claesson, Elaine Holmes, Paul D. Cotter

    Published in npj Science of Food (2023-08-01)
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  13. 13

    Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice by Roman M Stilling, Gerard M Moloney, Feargal J Ryan, Alan E Hoban, Thomaz FS Bastiaanssen, Fergus Shanahan, Gerard Clarke, Marcus J Claesson, Timothy G Dinan, John F Cryan

    Published in eLife (2018-05-01)
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  14. 14

    The developing pig respiratory microbiome harbors strains antagonistic to common respiratory pathogens by Abel A. Vlasblom, Birgitta Duim, Shriram Patel, Roosmarijn E. C. Luiken, Daniel Crespo-Piazuelo, Julia Eckenberger, Chloe E. Huseyin, Peadar G. Lawlor, Christian Elend, Jaap A. Wagenaar, Marcus J. Claesson, Aldert L. Zomer

    Published in mSystems (2024-10-01)
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  15. 15

    Butyrate Inhibits Osteoclast Activity In Vitro and Regulates Systemic Inflammation and Bone Healing in a Murine Osteotomy Model Compared to Antibiotic-Treated Mice by Alexandra Wallimann, Walker Magrath, Brenna Pugliese, Nino Stocker, Patrick Westermann, Anja Heider, Dominic Gehweiler, Stephan Zeiter, Marcus J. Claesson, R. Geoff Richards, Cezmi A. Akdis, Christopher J. Hernandez, Liam O’Mahony, Keith Thompson, T. Fintan Moriarty

    Published in Mediators of Inflammation (2021-01-01)
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  16. 16

    Host-microbe multi-omics and succinotype profiling have prognostic value for future relapse in patients with inflammatory bowel disease by Jill O’Sullivan, Shriram Patel, Gabriel E. Leventhal, Rachel S. Fitzgerald, Emilio J. Laserna-Mendieta, Chloe E. Huseyin, Nina Konstantinidou, Erica Rutherford, Aonghus Lavelle, Karim Dabbagh, Todd Z. DeSantis, Fergus Shanahan, Andriy Temko, Shoko Iwai, Marcus J. Claesson

    Published in Gut Microbes (2025-12-01)
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  17. 17

    Diversity of bifidobacteria within the infant gut microbiota. by Francesca Turroni, Clelia Peano, Daniel A Pass, Elena Foroni, Marco Severgnini, Marcus J Claesson, Colm Kerr, Jonathan Hourihane, Deirdre Murray, Fabio Fuligni, Miguel Gueimonde, Abelardo Margolles, Gianluca De Bellis, Paul W O'Toole, Douwe van Sinderen, Julian R Marchesi, Marco Ventura

    Published in PLoS ONE (2012-01-01)
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  18. 18

    Microbial bile salt hydrolase activity influences gene expression profiles and gastrointestinal maturation in infant mice by María A. Núñez-Sánchez, Florence M. Herisson, Jonathan M. Keane, Natalia García-González, Valerio Rossini, Jorge Pinhiero, Jack Daly, Milán Bustamante-Garrido, Cara M. Hueston, Shriram Patel, Nuria Canela, Pol Herrero, Marcus J. Claesson, Silvia Melgar, Ken Nally, Noel M. Caplice, Cormac G.M. Gahan

    Published in Gut Microbes (2022-12-01)
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  19. 19

    Low-Molecular-Weight Seaweed-Derived Polysaccharides Lead to Increased Faecal Bulk but Do Not Alter Human Gut Health Markers by Ciara D. Bannon, Julia Eckenberger, William John Snelling, Chloe Elizabeth Huseyin, Philip Allsopp, Conall Strain, Priya Ramnani, Roberto Chitarrari, John Grant, Sarah Hotchkiss, Kevin Philp, Ross Campbell, Kieran Michael Tuohy, Marcus J. Claesson, Nigel George Ternan, James S. G. Dooley, Roy D. Sleator, Ian Rowland, Chris I. R. Gill

    Published in Foods (2021-12-01)
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  20. 20

    Comparing Campylobacter jejuni to three other enteric pathogens in OligoMM12 mice reveals pathogen-specific host and microbiota responses by Mathias K.-M. Herzog, Audrey Peters, Nizar Shayya, Monica Cazzaniga, Kardokh Kaka Bra, Trisha Arora, Manja Barthel, Ersin Gül, Luca Maurer, Patrick Kiefer, Philipp Christen, Katharina Endhardt, Julia A. Vorholt, Gad Frankel, Markus M. Heimesaat, Stefan Bereswill, Cormac G. M. Gahan, Marcus J. Claesson, Xavier Domingo-Almenara, Wolf-Dietrich Hardt

    Published in Gut Microbes (2025-12-01)
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