Search Results - Mark D Robinson

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  1. 1

    pubassistant.ch: consolidating publication profiles of researchers [version 3; peer review: 3 approved] by Reto Gerber, Mark D. Robinson

    Published in F1000Research (2022-04-01)
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  2. 2

    ReSeq simulates realistic Illumina high-throughput sequencing data by Stephan Schmeing, Mark D. Robinson

    Published in Genome Biology (2021-02-01)
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  3. 3

    BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty by Simone Tiberi, Mark D. Robinson

    Published in Genome Biology (2020-03-01)
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  4. 4

    Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences [version 1; referees: 2 approved] by Charlotte Soneson, Michael I. Love, Mark D. Robinson

    Published in F1000Research (2015-12-01)
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  5. 5

    Benchmarking computational methods for single-cell chromatin data analysis by Siyuan Luo, Pierre-Luc Germain, Mark D. Robinson, Ferdinand von Meyenn

    Published in Genome Biology (2024-08-01)
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  6. 6

    Doublet identification in single-cell sequencing data using scDblFinder [version 2; peer review: 2 approved] by Aaron Lun, Carlos Garcia Meixide, Pierre-Luc Germain, Will Macnair, Mark D. Robinson

    Published in F1000Research (2022-05-01)
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  7. 7

    Author Correction: The shaky foundations of simulating single-cell RNA sequencing data by Helena L. Crowell, Sarah X. Morillo Leonardo, Charlotte Soneson, Mark D. Robinson

    Published in Genome Biology (2024-07-01)
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  8. 8

    The shaky foundations of simulating single-cell RNA sequencing data by Helena L. Crowell, Sarah X. Morillo Leonardo, Charlotte Soneson, Mark D. Robinson

    Published in Genome Biology (2023-03-01)
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  9. 9

    An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data [version 2; peer review: 2 approved] by Helena L. Crowell, Stéphane Chevrier, Sujana Sivapatham, Andrea Jacobs, Bernd Bodenmiller, Mark D. Robinson

    Published in F1000Research (2022-08-01)
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  10. 10

    Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing by Stephany Orjuela, Hannah R. Parker, Sija Sajibu, Fabrizio Cereatti, Matthias Sauter, Federico Buffoli, Mark D. Robinson, Giancarlo Marra

    Published in Epigenetics (2022-06-01)
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  11. 11

    ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw by Stefan Milosavljevic, Tony Kuo, Samuele Decarli, Lucas Mohn, Jun Sese, Kentaro K. Shimizu, Rie Shimizu-Inatsugi, Mark D. Robinson

    Published in BMC Genomics (2021-07-01)
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  12. 12

    On the identification of differentially-active transcription factors from ATAC-seq data. by Felix Ezequiel Gerbaldo, Emanuel Sonder, Vincent Fischer, Selina Frei, Jiayi Wang, Katharina Gapp, Mark D Robinson, Pierre-Luc Germain

    Published in PLoS Computational Biology (2024-10-01)
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  13. 13

    Validation of hypermethylated DNA regions found in colorectal cancers as potential aging-independent biomarkers of precancerous colorectal lesions by Sija Sajibu, Emanuel Sonder, Amit Tiwari, Stephany Orjuela, Hannah R. Parker, Olivier The Frans, Christoph Gubler, Giancarlo Marra, Mark D. Robinson

    Published in BMC Cancer (2023-10-01)
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  14. 14

    Are Epigenetic Factors Implicated in Chronic Widespread Pain? by Andrea Burri, Zoya Marinova, Mark D Robinson, Brigitte Kühnel, Melanie Waldenberger, Simone Wahl, Sonja Kunze, Christian Gieger, Gregory Livshits, Frances Williams

    Published in PLoS ONE (2016-01-01)
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  15. 15

    Ageing-Related Changes to H3K4me3, H3K27ac, and H3K27me3 in Purified Mouse Neurons by Brandon Signal, Andrew J. Phipps, Katherine A. Giles, Shannon N. Huskins, Timothy R. Mercer, Mark D. Robinson, Adele Woodhouse, Phillippa C. Taberlay

    Published in Cells (2024-08-01)
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  16. 16

    Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish by Gianluca D'Agati, Elena María Cabello, Karl Frontzek, Elisabeth J. Rushing, Robin Klemm, Mark D. Robinson, Richard M. White, Christian Mosimann, Alexa Burger

    Published in Disease Models & Mechanisms (2019-07-01)
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  17. 17

    Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations by Pasquale Primo, Angela Meccariello, Maria Grazia Inghilterra, Andrea Gravina, Giuseppe Del Corsano, Gennaro Volpe, Germano Sollazzo, Serena Aceto, Mark D. Robinson, Marco Salvemini, Giuseppe Saccone

    Published in BMC Genetics (2020-12-01)
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  18. 18

    Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair by Natasa Savic, Femke CAS Ringnalda, Helen Lindsay, Christian Berk, Katja Bargsten, Yizhou Li, Dario Neri, Mark D Robinson, Constance Ciaudo, Jonathan Hall, Martin Jinek, Gerald Schwank

    Published in eLife (2018-05-01)
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  19. 19

    Complement downregulation promotes an inflammatory signature that renders colorectal cancer susceptible to immunotherapy by Enric Domingo, Sahar El Aidy, Gary Hardiman, Carsten Krieg, Lukas M Weber, Bruno Fosso, Marinella Marzano, Monica M Olcina, Khalil Mallah, Mark D Robinson, Silvia Guglietta

    Published in Journal for ImmunoTherapy of Cancer (2022-09-01)
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  20. 20

    Ten simple rules for computational biologists collaborating with wet lab researchers. by Mark D Robinson, Peiying Cai, Martin Emons, Reto Gerber, Pierre-Luc Germain, Samuel Gunz, Siyuan Luo, Giulia Moro, Emanuel Sonder, Anthony Sonrel, Jiayi Wang, David Wissel, Izaskun Mallona

    Published in PLoS Computational Biology (2024-06-01)
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