Search Results - Matthew B Hufford

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  1. 1

    Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies by Shujun Ou, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford

    Published in Genome Biology (2024-01-01)
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  2. 2

    Natural variation in teosinte at the domestication locus teosinte branched1 (tb1) by Laura Vann, Thomas Kono, Tanja Pyhäjärvi, Matthew B. Hufford, Jeffrey Ross-Ibarra

    Published in PeerJ (2015-04-01)
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  3. 3

    The potential role of genetic assimilation during maize domestication. by Anne Lorant, Sarah Pedersen, Irene Holst, Matthew B Hufford, Klaus Winter, Dolores Piperno, Jeffrey Ross-Ibarra

    Published in PLoS ONE (2017-01-01)
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  4. 4

    GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations by Nancy Manchanda, John L. Portwood, Margaret R. Woodhouse, Arun S. Seetharam, Carolyn J. Lawrence-Dill, Carson M. Andorf, Matthew B. Hufford

    Published in BMC Genomics (2020-03-01)
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  5. 5

    The Streptochaeta Genome and the Evolution of the Grasses by Arun S. Seetharam, Yunqing Yu, Sébastien Bélanger, Lynn G. Clark, Blake C. Meyers, Blake C. Meyers, Elizabeth A. Kellogg, Matthew B. Hufford

    Published in Frontiers in Plant Science (2021-10-01)
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  6. 6

    Characterization of introgression from the teosinte Zea mays ssp. mexicana to Mexican highland maize by Eric Gonzalez-Segovia, Sergio Pérez-Limon, G. Carolina Cíntora-Martínez, Alejandro Guerrero-Zavala, Garrett M. Janzen, Matthew B. Hufford, Jeffrey Ross-Ibarra, Ruairidh J. H. Sawers

    Published in PeerJ (2019-05-01)
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  7. 7

    Author Correction: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline by Shujun Ou, Weijia Su, Yi Liao, Kapeel Chougule, Jireh R. A. Agda, Adam J. Hellinga, Carlos Santiago Blanco Lugo, Tyler A. Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford

    Published in Genome Biology (2022-03-01)
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  8. 8

    A happy accident: a novel turfgrass reference genome by Alyssa R Phillips, Arun S Seetharam, Patrice S Albert, Taylor AuBuchon-Elder, James A Birchler, Edward S Buckler, Lynn J Gillespie, Matthew B Hufford, Victor Llaca, Maria Cinta Romay, Robert J Soreng, Elizabeth A Kellogg, Jeffrey Ross-Ibarra

    Published in G3: Genes, Genomes, Genetics (2023-04-01)
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  9. 9

    Environmental data provide marginal benefit for predicting climate adaptation. by Forrest Li, Daniel J Gates, Edward S Buckler, Matthew B Hufford, Garrett M Janzen, Rubén Rellán-Álvarez, Fausto Rodríguez-Zapata, J Alberto Romero Navarro, Ruairidh J H Sawers, Samantha J Snodgrass, Kai Sonder, Martha C Willcox, Sarah J Hearne, Jeffrey Ross-Ibarra, Daniel E Runcie

    Published in PLoS Genetics (2025-06-01)
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  10. 10

    MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication by Jonathan Cahn, Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Srividya Ramakrishnan, Kapeel Chougule, Sharon Wei, Zhenyuan Lu, Xiaosa Xu, Umamaheswari Ramu, Jorg Drenkow, Cassidy Danyko, Melissa Kramer, Arun Seetharam, Matthew B. Hufford, W. Richard McCombie, Doreen Ware, David Jackson, Michael C. Schatz, Thomas R. Gingeras, Robert A. Martienssen

    Published in Nature Communications (2024-12-01)
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  11. 11

    Author Correction: MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication by Jonathan Cahn, Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Srividya Ramakrishnan, Kapeel Chougule, Sharon Wei, Zhenyuan Lu, Xiaosa Xu, Umamaheswari Ramu, Jorg Drenkow, Cassidy Danyko, Melissa Kramer, Arun Seetharam, Matthew B. Hufford, W. Richard McCombie, Doreen Ware, David Jackson, Michael C. Schatz, Thomas R. Gingeras, Robert A. Martienssen

    Published in Nature Communications (2025-07-01)
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