Search Results - Matthew Cotten

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  1. 1

    Evolution of increased positive charge on the SARS-CoV-2 spike protein may be adaptation to human transmission by Matthew Cotten, My V.T. Phan

    Published in iScience (2023-03-01)
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  2. 2

    SARS-CoV-2 Omicron BA.5 Infections in Vaccinated Persons, Rural Uganda by Joseph Mugisha, Bernard Mpairwe, Robert Newton, Matthew Cotten, My V.T. Phan

    Published in Emerging Infectious Diseases (2023-01-01)
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  3. 3

    The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences by Avraam Tapinos, Bede Constantinides, My V. T. Phan, Samaneh Kouchaki, Matthew Cotten, David L. Robertson

    Published in Viruses (2019-04-01)
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  4. 4

    Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm. by Matthew Cotten, Bas Oude Munnink, Marta Canuti, Martin Deijs, Simon J Watson, Paul Kellam, Lia van der Hoek

    Published in PLoS ONE (2014-01-01)
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  5. 5

    Evaluating the performance of tools used to call minority variants from whole genome short-read data [version 2; referees: 2 approved] by Khadija Said Mohammed, Nelson Kibinge, Pjotr Prins, Charles N. Agoti, Matthew Cotten, D.J. Nokes, Samuel Brand, George Githinji

    Published in Wellcome Open Research (2018-09-01)
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  6. 6

    Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules. by Kieran D Lamb, Martha M Luka, Megan Saathoff, Richard J Orton, My V T Phan, Matthew Cotten, Ke Yuan, David L Robertson

    Published in PLoS Computational Biology (2024-01-01)
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  7. 7

    Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya by My V. T. Phan, Charles N. Agoti, Patrick K. Munywoki, Grieven P. Otieno, Mwanajuma Ngama, Paul Kellam, Matthew Cotten, D. James Nokes

    Published in Scientific Reports (2022-01-01)
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  8. 8

    Optimisation and Validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda by Gerald Kevin Oluka, Gerald Kevin Oluka, Patricia Namubiru, Laban Kato, Violet Ankunda, Ben Gombe, Matthew Cotten, Matthew Cotten, The COVID-19 Immunoprofiling Team, The COVID-19 Immunoprofiling Team, Monica Musenero, Pontiano Kaleebu, Pontiano Kaleebu, Julie Fox, Jennifer Serwanga, Jennifer Serwanga, Claire Baine, Jackson Sembera, Susan Mugaba, Christine Hermilia Akoli, Geoffrey Odoch, Deus Mwesigwa, Peter Ejou, Joseph Ssebwana Katende

    Published in Frontiers in Immunology (2023-03-01)
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  9. 9

    HTLV-1 and HIV-2 infection are associated with increased mortality in a rural West African community. by Carla van Tienen, Maarten Schim van der Loeff, Ingrid Peterson, Matthew Cotten, Sören Andersson, Birgitta Holmgren, Tim Vincent, Thushan de Silva, Sarah Rowland-Jones, Peter Aaby, Hilton Whittle

    Published in PLoS ONE (2011-01-01)
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  10. 10

    Establishing farm dust as a useful viral metagenomic surveillance matrix by Kirsty T. T. Kwok, Myrna M. T. de Rooij, Aniek B. Messink, Inge M. Wouters, Lidwien A. M. Smit, Matthew Cotten, Dick J. J. Heederik, Marion P. G. Koopmans, My V. T. Phan

    Published in Scientific Reports (2022-09-01)
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  11. 11

    Molecular epidemiology of endemic human T-lymphotropic virus type 1 in a rural community in Guinea-Bissau. by Carla van Tienen, Thushan I de Silva, Luiz Carlos Junior Alcantara, Clayton O Onyango, Sheikh Jarju, Nato Gonçalves, Tim Vincent, Peter Aaby, Hilton Whittle, Maarten Schim van der Loeff, Matthew Cotten

    Published in PLoS Neglected Tropical Diseases (2012-01-01)
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  12. 12

    Field evaluation of the performance of seven Antigen Rapid diagnostic tests for the diagnosis of SARs-CoV-2 virus infection in Uganda. by Josephine Bwogi, Tom Lutalo, Phionah Tushabe, Henry Bukenya, James Peter Eliku, Isaac Ssewanyana, Susan Nabadda, Christopher Nsereko, Matthew Cotten, Robert Downing, Julius Lutwama, Pontiano Kaleebu, EPI Laboratory team, UVRI -COVID 19 Technical team

    Published in PLoS ONE (2022-01-01)
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  13. 13

    Field evaluation of the performance of seven Antigen Rapid diagnostic tests for the diagnosis of SARs-CoV-2 virus infection in Uganda by Josephine Bwogi, Tom Lutalo, Phionah Tushabe, Henry Bukenya, James Peter Eliku, Isaac Ssewanyana, Susan Nabadda, Christopher Nsereko, Matthew Cotten, Robert Downing, Julius Lutwama, Pontiano Kaleebu, EPI Laboratory team, UVRI -COVID 19 Technical team

    Published in PLoS ONE (2022-01-01)
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  14. 14

    No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study by Michael Roach, Adrian Cantu, Melissa Krizia Vieri, Matthew Cotten, Paul Kellam, My Phan, Lia van der Hoek, Michel Mandro, Floribert Tepage, Germain Mambandu, Gisele Musinya, Anne Laudisoit, Robert Colebunders, Robert Edwards, John L. Mokili

    Published in Pathogens (2021-06-01)
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  15. 15

    Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters by Sofia Strubbia, Julien Schaeffer, Bas B. Oude Munnink, Alban Besnard, My V. T. Phan, David F. Nieuwenhuijse, Miranda de Graaf, Claudia M. E. Schapendonk, Candice Wacrenier, Matthew Cotten, Marion P. G. Koopmans, Françoise S. Le Guyader

    Published in Frontiers in Microbiology (2019-10-01)
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  16. 16

    Epstein-Barr virus but not cytomegalovirus is associated with reduced vaccine antibody responses in Gambian infants. by Beth Holder, David J C Miles, Steve Kaye, Sarah Crozier, Nuredin Ibrahim Mohammed, Nancy O Duah, Elishia Roberts, Olubukola Ojuola, Melba S Palmero, Ebrima S Touray, Pauline Waight, Matthew Cotten, Sarah Rowland-Jones, Marianne van der Sande, Hilton Whittle

    Published in PLoS ONE (2010-11-01)
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  17. 17

    Taking forward a ‘One Health’ approach for turning the tide against the Middle East respiratory syndrome coronavirus and other zoonotic pathogens with epidemic potential by Alimuddin Zumla, Osman Dar, Richard Kock, Matthew Muturi, Francine Ntoumi, Pontiano Kaleebu, Macete Eusebio, Sayoki Mfinanga, Matthew Bates, Peter Mwaba, Rashid Ansumana, Mishal Khan, Abdulaziz N. Alagaili, Matthew Cotten, Esam I. Azhar, Markus Maeurer, Giuseppe Ippolito, Eskild Petersen

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  18. 18

    HIV-1 <i>Gag-Pol</i> Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity by Anne Kapaata, Sheila N. Balinda, Rui Xu, Maria G. Salazar, Kimberly Herard, Kelsie Brooks, Kato Laban, Jonathan Hare, Dario Dilernia, Anatoli Kamali, Eugene Ruzagira, Freddie Mukasa, Jill Gilmour, Jesus F. Salazar-Gonzalez, Ling Yue, Matthew Cotten, Eric Hunter, Pontiano Kaleebu

    Published in Viruses (2021-01-01)
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  19. 19

    Human Infection with MERS Coronavirus after Exposure to Infected Camels, Saudi Arabia, 2013 by Ziad A. Memish, Matthew Cotten, Benjamin Meyer, Simon J. Watson, Abdullah J. Alsahafi, Abdullah A. Al Rabeeah, Victor Max Corman, Andrea Sieberg, Hatem Q. Makhdoom, Abdullah Assiri, Malaki Al Masri, Souhaib Aldabbagh, Berend-Jan Bosch, Martin Beer, Marcel A. Müller, Paul Kellam, Christian Drosten

    Published in Emerging Infectious Diseases (2014-06-01)
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  20. 20

    Field evaluation of the performance of a SARS-CoV-2 antigen rapid diagnostic test in Uganda using nasopharyngeal samples by Aminah Nalumansi, Tom Lutalo, John Kayiwa, Christine Watera, Stephen Balinandi, Jocelyn Kiconco, Joweria Nakaseegu, Denis Olara, Emmanuel Odwilo, Jennifer Serwanga, Bernard Kikaire, Deogratius Ssemwanga, Susan Nabadda, Isaac Ssewanyana, Diane Atwine, Henry Mwebesa, Henry Kyobe Bosa, Christopher Nsereko, Matthew Cotten, Robert Downing, Julius Lutwama, Pontiano Kaleebu

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