Search Results - Matthew E. Ritchie

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  1. 1

    VEGF-dependent testicular vascularisation involves MEK1/2 signalling and the essential angiogenesis factors, SOX7 and SOX17 by Rheannon O. Blücher, Rachel S. Lim, Matthew E. Ritchie, Patrick S. Western

    Published in BMC Biology (2024-10-01)
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  2. 2

    FGF-independent MEK1/2 signalling in the developing foetal testis is essential for male germline differentiation in mice by Rheannon O. Blücher, Rachel S. Lim, Ellen G. Jarred, Matthew E. Ritchie, Patrick S. Western

    Published in BMC Biology (2023-12-01)
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  3. 3

    Easy and efficient ensemble gene set testing with EGSEA [version 1; referees: 1 approved, 3 approved with reservations] by Monther Alhamdoosh, Charity W. Law, Luyi Tian, Julie M. Sheridan, Milica Ng, Matthew E. Ritchie

    Published in F1000Research (2017-11-01)
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  4. 4

    Corrigendum to ‘A transcriptomic dataset evaluating the effect of radiotherapy injury on cells of skin and soft tissue’ Data in Brief 41 (2022) 107828 by Lipi Shuka, Stuart A. Lee, Mei R.M. Du, Tara Karnezis, Matthew E. Ritchie, Ramin Shayan

    Published in Data in Brief (2022-08-01)
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  5. 5

    A streamlined workflow for long-read DNA methylation analysis with NanoMethViz and Bioconductor [version 2; peer review: 2 approved] by Kelsey Breslin, Shian Su, Tamara Cameron, James Lancaster, Lucinda Xiao, Matthew E. Ritchie, Peter F. Hickey, Quentin Gouil, Marnie E. Blewitt

    Published in F1000Research (2025-02-01)
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  6. 6

    Publisher Correction: Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data by Yue You, Xueyi Dong, Yong Kiat Wee, Mhairi J. Maxwell, Monther Alhamdoosh, Gordon K. Smyth, Peter F. Hickey, Matthew E. Ritchie, Charity W. Law

    Published in Genome Biology (2023-05-01)
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  7. 7

    Modifier effects between regulatory and protein-coding variation. by Antigone S Dimas, Barbara E Stranger, Claude Beazley, Robert D Finn, Catherine E Ingle, Matthew S Forrest, Matthew E Ritchie, Panos Deloukas, Simon Tavaré, Emmanouil T Dermitzakis

    Published in PLoS Genetics (2008-10-01)
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  8. 8

    Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data by Yue You, Xueyi Dong, Yong Kiat Wee, Mhairi J. Maxwell, Monther Alhamdoosh, Gordon K. Smyth, Peter F. Hickey, Matthew E. Ritchie, Charity W. Law

    Published in Genome Biology (2023-05-01)
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  9. 9

    Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation by Iromi Wanigasuriya, Sarah A. Kinkel, Tamara Beck, Ellise A. Roper, Kelsey Breslin, Heather J. Lee, Andrew Keniry, Matthew E. Ritchie, Marnie E. Blewitt, Quentin Gouil

    Published in Epigenetics & Chromatin (2022-07-01)
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  10. 10

    A dataset examining technical factors on fixed white blood cell single-cell RNA-seqGene expression Omnibus by Daniel V Brown, Agnieszka Swierczak, Yue You, Yupei You, Daniela Amann-Zalcenstein, Peter Hickey, Arthur Hsu, Matthew E. Ritchie, Monther Alhamdoosh, Judith Field, Rory Bowden

    Published in Data in Brief (2024-12-01)
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  11. 11

    Smchd1 is a maternal effect gene required for genomic imprinting by Iromi Wanigasuriya, Quentin Gouil, Sarah A Kinkel, Andrés Tapia del Fierro, Tamara Beck, Ellise A Roper, Kelsey Breslin, Jessica Stringer, Karla Hutt, Heather J Lee, Andrew Keniry, Matthew E Ritchie, Marnie E Blewitt

    Published in eLife (2020-11-01)
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  12. 12

    Hookworms dynamically respond to loss of Type 2 immune pressure. by Annabel A Ferguson, Juan M Inclan-Rico, Dihong Lu, Sarah D Bobardt, LiYin Hung, Quentin Gouil, Louise Baker, Matthew E Ritchie, Aaron R Jex, Erich M Schwarz, Heather L Rossi, Meera G Nair, Adler R Dillman, De'Broski R Herbert

    Published in PLoS Pathogens (2023-12-01)
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  13. 13

    Benchmarking spatial transcriptomics technologies with the multi-sample SpatialBenchVisium dataset by Mei R. M. Du, Changqing Wang, Charity W. Law, Daniela Amann-Zalcenstein, Casey J. A. Anttila, Ling Ling, Peter F. Hickey, Callum J. Sargeant, Yunshun Chen, Lisa J. Ioannidis, Pradeep Rajasekhar, Raymond K. H. Yip, Kelly L. Rogers, Diana S. Hansen, Rory Bowden, Matthew E. Ritchie

    Published in Genome Biology (2025-03-01)
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  14. 14

    TIRE-seq simplifies transcriptomics via integrated RNA capture and library preparation by Piper O’Keeffe, Yasmin Nouri, Hui Shi Saw, Zachery Moore, Tracey M. Baldwin, Sam W. Z. Olechnowicz, Jafar S. Jabbari, David McG Squire, Stephen Leslie, Changqing Wang, Yupei You, Matthew E. Ritchie, Ryan S. Cross, Misty R. Jenkins, Cindy Audiger, Shalin H. Naik, James R. Whittle, Saskia Freytag, Sarah A. Best, Peter F. Hickey, Daniela Amann-Zalcenstein, Rory Bowden, Daniel V. Brown

    Published in Scientific Reports (2025-05-01)
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  15. 15

    SMCHD1 has separable roles in chromatin architecture and gene silencing that could be targeted in disease by Andres Tapia del Fierro, Bianca den Hamer, Natalia Benetti, Natasha Jansz, Kelan Chen, Tamara Beck, Hannah Vanyai, Alexandra D. Gurzau, Lucia Daxinger, Shifeng Xue, Thanh Thao Nguyen Ly, Iromi Wanigasuriya, Megan Iminitoff, Kelsey Breslin, Harald Oey, Yvonne D. Krom, Dinja van der Hoorn, Linde F. Bouwman, Timothy M. Johanson, Matthew E. Ritchie, Quentin A. Gouil, Bruno Reversade, Fabrice Prin, Timothy Mohun, Silvère M. van der Maarel, Edwina McGlinn, James M. Murphy, Andrew Keniry, Jessica C. de Greef, Marnie E. Blewitt

    Published in Nature Communications (2023-09-01)
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  16. 16

    An immunohistochemical atlas of necroptotic pathway expression by Shene Chiou, Aysha H Al-Ani, Yi Pan, Komal M Patel, Isabella Y Kong, Lachlan W Whitehead, Amanda Light, Samuel N Young, Marilou Barrios, Callum Sargeant, Pradeep Rajasekhar, Leah Zhu, Anne Hempel, Ann Lin, James A Rickard, Cathrine Hall, Pradnya Gangatirkar, Raymond KH Yip, Wayne Cawthorne, Annette V Jacobsen, Christopher R Horne, Katherine R Martin, Lisa J Ioannidis, Diana S Hansen, Jessica Day, Ian P Wicks, Charity Law, Matthew E Ritchie, Rory Bowden, Joanne M Hildebrand, Lorraine A O’Reilly, John Silke, Lisa Giulino-Roth, Ellen Tsui, Kelly L Rogers, Edwin D Hawkins, Britt Christensen, James M Murphy, André L Samson

    Published in EMBO Molecular Medicine (2024-05-01)
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