Search Results - Nathan M Springer

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  1. 1

    Density Stress has Minimal Impacts on the Barley or Maize Seedling Transcriptome by Summer St. Pierre, Nathan M. Springer, Gary J. Muehlbauer

    Published in The Plant Genome (2011-03-01)
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  2. 2

    Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser. by Robert J Schaefer, Roman Briskine, Nathan M Springer, Chad L Myers

    Published in PLoS ONE (2014-01-01)
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  3. 3

    Variation in DNA Methylation Patterns is More Common among Maize Inbreds than among Tissues by Steven R. Eichten, Matthew W. Vaughn, Peter J. Hermanson, Nathan M. Springer

    Published in The Plant Genome (2013-07-01)
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  4. 4

    Widespread imprinting of transposable elements and variable genes in the maize endosperm. by Sarah N Anderson, Peng Zhou, Kaitlin Higgins, Yaniv Brandvain, Nathan M Springer

    Published in PLoS Genetics (2021-04-01)
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  5. 5

    Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks by Travis Wrightsman, Alexandre P. Marand, Peter A. Crisp, Nathan M. Springer, Edward S. Buckler

    Published in The Plant Genome (2022-09-01)
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  6. 6

    Mapping responsive genomic elements to heat stress in a maize diversity panel by Zhikai Liang, Zachary A. Myers, Dominic Petrella, Julia Engelhorn, Thomas Hartwig, Nathan M. Springer

    Published in Genome Biology (2022-11-01)
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  7. 7

    Opportunities and challenges in phenotyping row crops using drone‐based RGB imaging by Dorothy D. Sweet, Sara B. Tirado, Nathan M. Springer, Candice N. Hirsch, Cory D. Hirsch

    Published in Plant Phenome Journal (2022-01-01)
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  8. 8

    DNA demethylation affects imprinted gene expression in maize endosperm by Qiang Xu, Leiming Wu, Zhixiang Luo, Mei Zhang, Jinsheng Lai, Lin Li, Nathan M. Springer, Qing Li

    Published in Genome Biology (2022-03-01)
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  9. 9

    Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways by Sarah N. Anderson, Gregory J. Zynda, Jawon Song, Zhaoxue Han, Matthew W. Vaughn, Qing Li, Nathan M. Springer

    Published in G3: Genes, Genomes, Genetics (2018-06-01)
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  10. 10

    Transposable elements contribute to activation of maize genes in response to abiotic stress. by Irina Makarevitch, Amanda J Waters, Patrick T West, Michelle Stitzer, Candice N Hirsch, Jeffrey Ross-Ibarra, Nathan M Springer

    Published in PLoS Genetics (2015-01-01)
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  11. 11

    Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. by Rajandeep S Sekhon, Roman Briskine, Candice N Hirsch, Chad L Myers, Nathan M Springer, C Robin Buell, Natalia de Leon, Shawn M Kaeppler

    Published in PLoS ONE (2013-01-01)
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  12. 12

    Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in maize by Jing Xu, Guo Chen, Peter J. Hermanson, Qiang Xu, Changshuo Sun, Wenqing Chen, Qiuxin Kan, Minqi Li, Peter A. Crisp, Jianbing Yan, Lin Li, Nathan M. Springer, Qing Li

    Published in Genome Biology (2019-11-01)
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  13. 13

    Genotype-by-environment interactions affecting heterosis in maize. by Zhi Li, Lisa Coffey, Jacob Garfin, Nathan D Miller, Michael R White, Edgar P Spalding, Natalia de Leon, Shawn M Kaeppler, Patrick S Schnable, Nathan M Springer, Candice N Hirsch

    Published in PLoS ONE (2018-01-01)
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  14. 14

    Mendelian and non-Mendelian regulation of gene expression in maize. by Lin Li, Katherine Petsch, Rena Shimizu, Sanzhen Liu, Wayne Wenzhong Xu, Kai Ying, Jianming Yu, Michael J Scanlon, Patrick S Schnable, Marja C P Timmermans, Nathan M Springer, Gary J Muehlbauer

    Published in PLoS Genetics (2013-01-01)
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  15. 15

    Correction: Mendelian and Non-Mendelian Regulation of Gene Expression in Maize. by Lin Li, Katherine Petsch, Rena Shimizu, Sanzhen Liu, Wayne Wenzhong Xu, Kai Ying, Jianming Yu, Michael J Scanlon, Patrick S Schnable, Marja C P Timmermans, Nathan M Springer, Gary J Muehlbauer

    Published in PLoS Genetics (2018-02-01)
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  16. 16

    Monitoring the interplay between transposable element families and DNA methylation in maize. by Jaclyn M Noshay, Sarah N Anderson, Peng Zhou, Lexiang Ji, William Ricci, Zefu Lu, Michelle C Stitzer, Peter A Crisp, Candice N Hirsch, Xiaoyu Zhang, Robert J Schmitz, Nathan M Springer

    Published in PLoS Genetics (2019-09-01)
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  17. 17

    Spreading of heterochromatin is limited to specific families of maize retrotransposons. by Steven R Eichten, Nathanael A Ellis, Irina Makarevitch, Cheng-Ting Yeh, Jonathan I Gent, Lin Guo, Karen M McGinnis, Xiaoyu Zhang, Patrick S Schnable, Matthew W Vaughn, R Kelly Dawe, Nathan M Springer

    Published in PLoS Genetics (2012-01-01)
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  18. 18

    Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. by Nathan M Springer, Kai Ying, Yan Fu, Tieming Ji, Cheng-Ting Yeh, Yi Jia, Wei Wu, Todd Richmond, Jacob Kitzman, Heidi Rosenbaum, A Leonardo Iniguez, W Brad Barbazuk, Jeffrey A Jeddeloh, Daniel Nettleton, Patrick S Schnable

    Published in PLoS Genetics (2009-11-01)
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