Search Results - Nicholas R Thomson

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  1. 1

    Panakeia - a universal tool for bacterial pangenome analysis by Sina Beier, Nicholas R Thomson

    Published in BMC Genomics (2022-04-01)
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  2. 2

    High quality transcriptome profiling confirms the transcriptional landscape of Treponema pallidum subsp. pallidum by Linda Grillová, Eli M. Carrami, William Roberts-Sengier, Nicholas R. Thomson

    Published in Scientific Reports (2025-07-01)
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  3. 3

    Genetic Markers in <i>S.</i> Paratyphi C Reveal Primary Adaptation to Pigs by Satheesh Nair, Maria Fookes, Craig Corton, Nicholas R. Thomson, John Wain, Gemma C. Langridge

    Published in Microorganisms (2020-04-01)
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  4. 4

    Molecular characterisation of the Chlamydia pecorum plasmid from porcine, ovine, bovine, and koala strains indicates plasmid-strain co-evolution by Martina Jelocnik, Nathan L. Bachmann, Helena Seth-Smith, Nicholas R. Thomson, Peter Timms, Adam M. Polkinghorne

    Published in PeerJ (2016-02-01)
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  5. 5

    Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis. by Paul J S Skipp, Chris Hughes, Thérèse McKenna, Richard Edwards, James Langridge, Nicholas R Thomson, Ian N Clarke

    Published in PLoS ONE (2016-01-01)
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  6. 6

    Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences. by Grace A Blackwell, Martin Hunt, Kerri M Malone, Leandro Lima, Gal Horesh, Blaise T F Alako, Nicholas R Thomson, Zamin Iqbal

    Published in PLoS Biology (2021-11-01)
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  7. 7

    Isolation and Characterisation of Bacteriophage Selective for Key <i>Acinetobacter baumannii</i> Capsule Chemotypes by Rosesathorn Soontarach, Potjanee Srimanote, Mark C. Enright, George Blundell-Hunter, Matthew J. Dorman, Nicholas R. Thomson, Peter W. Taylor, Supayang P. Voravuthikunchai

    Published in Pharmaceuticals (2022-04-01)
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  8. 8

    High diversity of Escherichia coli causing invasive disease in neonates in Malawi poses challenges for O-antigen based vaccine approach by Oliver Pearse, Allan Zuza, Edith Tewesa, Patricia Siyabu, Alice J. Fraser, Jennifer Cornick, Kondwani Kawaza, Patrick Musicha, Nicholas R. Thomson, Nicholas A. Feasey, Eva Heinz

    Published in Communications Medicine (2025-07-01)
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  9. 9

    Combining machine learning with high-content imaging to infer ciprofloxacin susceptibility in isolates of Salmonella Typhimurium by Tuan-Anh Tran, Sushmita Sridhar, Stephen T. Reece, Octavie Lunguya, Jan Jacobs, Sandra Van Puyvelde, Florian Marks, Gordon Dougan, Nicholas R. Thomson, Binh T. Nguyen, Pham The Bao, Stephen Baker

    Published in Nature Communications (2024-06-01)
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  10. 10

    Genomic epidemiology of enteropathogenic Escherichia coli in southwestern Nigeria. by Olabisi C Akinlabi, Rotimi A Dada, Ademola A Olayinka, Ibukunoluwa O Oginni-Falajiki, Oyeniyi S Bejide, Pelumi D Adewole, Nicholas R Thomson, Aaron O Aboderin, Iruka N Okeke

    Published in PLoS Neglected Tropical Diseases (2025-08-01)
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  11. 11

    Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. by Marcelino Garrine, Inácio Mandomando, Delfino Vubil, Tacilta Nhampossa, Sozinho Acacio, Shan Li, Joseph N Paulson, Mathieu Almeida, Daryl Domman, Nicholas R Thomson, Pedro Alonso, Oscar Colin Stine

    Published in PLoS Neglected Tropical Diseases (2017-06-01)
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  12. 12

    Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis. by Kristine B Arnvig, Iñaki Comas, Nicholas R Thomson, Joanna Houghton, Helena I Boshoff, Nicholas J Croucher, Graham Rose, Timothy T Perkins, Julian Parkhill, Gordon Dougan, Douglas B Young

    Published in PLoS Pathogens (2011-11-01)
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  13. 13

    Salmonella Enteritidis isolate harboring multiple efflux pumps and pathogenicity factors, shows absence of O antigen polymerase gene by Daniela Jones-Dias, Daniela Jones-Dias, Lurdes Clemente, Conceicao Egas, Hugo Froufe, Daniel Ataíde Sampaio, Luís Vieira, Maria Fookes, Nicholas R. Thomson, Vera Manageiro, Vera Manageiro, Manuela Caniça

    Published in Frontiers in Microbiology (2016-08-01)
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  14. 14

    Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand by Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M. Batty, Nicholas P. J. Day, Wasun Chantratita, T. Eoin West, Nicholas R. Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita

    Published in Nature Communications (2024-07-01)
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  15. 15

    The regulon of Brucella abortus two-component system BvrR/BvrS reveals the coordination of metabolic pathways required for intracellular life by Olga Rivas-Solano, Mathilde Van der Henst, Amanda Castillo-Zeledón, Marcela Suárez-Esquivel, Lohendy Muñoz-Vargas, Zeuz Capitan-Barrios, Nicholas R. Thomson, Esteban Chaves-Olarte, Edgardo Moreno, Xavier De Bolle, Caterina Guzmán-Verri

    Published in PLoS ONE (2022-01-01)
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  16. 16

    Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. by Olusegun Oshota, Max Conway, Maria Fookes, Fernanda Schreiber, Roy R Chaudhuri, Lu Yu, Fiona J E Morgan, Simon Clare, Jyoti Choudhary, Nicholas R Thomson, Pietro Lio, Duncan J Maskell, Pietro Mastroeni, Andrew J Grant

    Published in PLoS ONE (2017-01-01)
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  17. 17

    High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality by Fatemeh A. Ghomi, Jakob J. Jung, Gemma C. Langridge, Amy K. Cain, Christine J. Boinett, Moataz Abd El Ghany, Derek J. Pickard, Robert A. Kingsley, Nicholas R. Thomson, Julian Parkhill, Paul P. Gardner, Lars Barquist

    Published in mBio (2024-10-01)
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  18. 18

    Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance... by Eva Heinz, Oliver Pearse, Allan Zuza, Sithembile Bilima, Chisomo Msefula, Patrick Musicha, Patriciah Siyabu, Edith Tewesa, Fabrice E. Graf, Rebecca Lester, Samantha Lissauer, Jennifer Cornick, Joseph M. Lewis, Kondwani Kawaza, Nicholas R. Thomson, Nicholas A. Feasey

    Published in Genome Medicine (2024-05-01)
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  19. 19

    Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014. by Fahima Chowdhury, Alison E Mather, Yasmin Ara Begum, Muhammad Asaduzzaman, Nabilah Baby, Salma Sharmin, Rajib Biswas, Muhammad Ikhtear Uddin, Regina C LaRocque, Jason B Harris, Stephen B Calderwood, Edward T Ryan, John D Clemens, Nicholas R Thomson, Firdausi Qadri

    Published in PLoS Neglected Tropical Diseases (2015-11-01)
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  20. 20

    Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis by Aline Cuénod, Jessica Agnetti, Helena M. B. Seth-Smith, Tim Roloff, Denise Wälchli, Dimitri Shcherbakov, Rashid Akbergenov, Sarah Tschudin-Sutter, Stefano Bassetti, Martin Siegemund, Christian H. Nickel, Jacob Moran-Gilad, Timothy G. Keys, Valentin Pflüger, Nicholas R. Thomson, Adrian Egli

    Published in Genome Medicine (2023-10-01)
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