Search Results - Patrick Munk

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  1. 1

    MAGICIAN: MAG simulation for investigating criteria for bioinformatic analysis by Kat Steinke, Sünje J. Pamp, Patrick Munk

    Published in BMC Genomics (2024-01-01)
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  2. 2

    Flankophile: a bioinformatic pipeline for prokaryotic genomic synteny analysis by Alix Vincent Thorn, Frank M. Aarestrup, Patrick Munk

    Published in Microbiology Spectrum (2024-01-01)
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  3. 3

    Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome by Line Jensen Ostenfeld, Patrick Munk, Frank M. Aarestrup, Saria Otani

    Published in PLoS ONE (2023-01-01)
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  4. 4

    Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome. by Line Jensen Ostenfeld, Patrick Munk, Frank M Aarestrup, Saria Otani

    Published in PLoS ONE (2023-01-01)
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  5. 5

    Robustness in quantifying the abundance of antimicrobial resistance genes in pooled faeces samples from batches of slaughter pigs using metagenomics analysis by Vibe Dalhoff Andersen, Marie Stengaard Jensen, Patrick Munk, Håkan Vigre

    Published in Journal of Global Antimicrobial Resistance (2021-03-01)
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  6. 6

    Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome by Hannah-Marie Martiny, Patrick Munk, Christian Brinch, Frank M. Aarestrup, M. Luz Calle, Thomas N. Petersen

    Published in Microbiology Spectrum (2024-07-01)
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  7. 7

    High throughput single cell metagenomic sequencing with semi-permeable capsules: unraveling microbial diversity at the single-cell level in sewage and fecal microbiomes by Meilee Ling, Judit Szarvas, Vaida Kurmauskaitė, Vaidotas Kiseliovas, Rapolas Žilionis, Rapolas Žilionis, Baptiste Avot, Baptiste Avot, Patrick Munk, Frank M. Aarestrup

    Published in Frontiers in Microbiology (2025-02-01)
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  8. 8

    Metagenomics analysis of sewage for surveillance of antimicrobial resistance in South Africa by Anthony M. Smith, Masindi Ramudzulu, Patrick Munk, Baptiste J. P. Avot, Kerneels C. M. Esterhuyse, Nico van Blerk, Stanford Kwenda, Phuti Sekwadi

    Published in PLoS ONE (2024-01-01)
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  9. 9

    SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies by Derya Aytan-Aktug, Vladislav Grigorjev, Judit Szarvas, Philip T. L. C. Clausen, Patrick Munk, Marcus Nguyen, James J. Davis, Frank M. Aarestrup, Ole Lund

    Published in Microbiology Spectrum (2022-12-01)
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  10. 10

    PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest by Derya Aytan-Aktug, Philip T. L. C. Clausen, Judit Szarvas, Patrick Munk, Saria Otani, Marcus Nguyen, James J. Davis, Ole Lund, Frank M. Aarestrup

    Published in mSystems (2022-04-01)
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  11. 11

    Association of health, nutrition, and socioeconomic variables with global antimicrobial resistance: a modelling study by Patrick Murigu Kamau Njage, PhD, Bram van Bunnik, PhD, Patrick Munk, PhD, Ana Rita Pinheiro Marques, PhD, Frank M Aarestrup, ProfPhD

    Published in The Lancet Planetary Health (2023-11-01)
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  12. 12

    The European livestock resistome by Patrick Munk, Dongsheng Yang, Timo Röder, Leonie Maier, Thomas Nordahl Petersen, Ana Sofia Ribeiro Duarte, Philip T. L. C. Clausen, Christian Brinch, Liese Van Gompel, Roosmarijn Luiken, Jaap A. Wagenaar, Heike Schmitt, Dick J. J. Heederik, Dik J. Mevius, Lidwien A. M. Smit, Alex Bossers, Frank M. Aarestrup

    Published in mSystems (2024-04-01)
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  13. 13

    Risk Factors for Antimicrobial Resistance in Turkey Farms: A Cross-Sectional Study in Three European Countries by Mayu Horie, Dongsheng Yang, Philip Joosten, Patrick Munk, Katharina Wadepohl, Claire Chauvin, Gabriel Moyano, Magdalena Skarżyńska, Jeroen Dewulf, Frank M. Aarestrup, Thomas Blaha, Pascal Sanders, Bruno Gonzalez-Zorn, Dariusz Wasyl, Jaap A. Wagenaar, Dick Heederik, Dik Mevius, Heike Schmitt, Lidwien A. M. Smit, Liese Van Gompel

    Published in Antibiotics (2021-07-01)
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  14. 14

    Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance by Ágnes Becsei, Alessandro Fuschi, Saria Otani, Ravi Kant, Ilja Weinstein, Patricia Alba, József Stéger, Dávid Visontai, Christian Brinch, Miranda de Graaf, Claudia M. E. Schapendonk, Antonio Battisti, Alessandra De Cesare, Chiara Oliveri, Fulvia Troja, Tarja Sironen, Olli Vapalahti, Frédérique Pasquali, Krisztián Bányai, Magdolna Makó, Péter Pollner, Alessandra Merlotti, Marion Koopmans, Istvan Csabai, Daniel Remondini, Frank M. Aarestrup, Patrick Munk

    Published in Nature Communications (2024-08-01)
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  15. 15

    Author Correction: Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance by Ágnes Becsei, Alessandro Fuschi, Saria Otani, Ravi Kant, Ilja Weinstein, Patricia Alba, József Stéger, Dávid Visontai, Christian Brinch, Miranda de Graaf, Claudia M. E. Schapendonk, Antonio Battisti, Alessandra De Cesare, Chiara Oliveri, Fulvia Troja, Tarja Sironen, Olli Vapalahti, Frédérique Pasquali, Krisztián Bányai, Magdolna Makó, Péter Pollner, Alessandra Merlotti, Marion Koopmans, Istvan Csabai, Daniel Remondini, Frank M. Aarestrup, Patrick Munk

    Published in Nature Communications (2024-10-01)
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