Search Results - Peter J. Castaldi

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  1. 1

    Bipartite Community Structure of eQTLs. by John Platig, Peter J Castaldi, Dawn DeMeo, John Quackenbush

    Published in PLoS Computational Biology (2016-09-01)
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  2. 2

    Laboratory mouse models for the human genome-wide associations. by Georgios D Kitsios, Navdeep Tangri, Peter J Castaldi, John P A Ioannidis

    Published in PLoS ONE (2010-11-01)
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  3. 3

    A generalized higher-order correlation analysis framework for multi-omics network inference. by Weixuan Liu, Katherine A Pratte, Peter J Castaldi, Craig Hersh, Russell P Bowler, Farnoush Banaei-Kashani, Katerina J Kechris

    Published in PLoS Computational Biology (2025-04-01)
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  4. 4

    Peripheral blood microbial signatures in current and former smokers by Jarrett D. Morrow, Peter J. Castaldi, Robert P. Chase, Jeong H. Yun, Sool Lee, Yang-Yu Liu, Craig P. Hersh

    Published in Scientific Reports (2021-10-01)
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  5. 5

    Integrative genomics identifies new genes associated with severe COPD and emphysema by Phuwanat Sakornsakolpat, Jarrett D. Morrow, Peter J. Castaldi, Craig P. Hersh, Yohan Bossé, Edwin K. Silverman, Ani Manichaikul, Michael H. Cho

    Published in Respiratory Research (2018-03-01)
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  6. 6

    Correlation-based network integration of lung RNA sequencing and DNA methylation data in chronic obstructive pulmonary disease by Pasquale Sibilio, Federica Conte, Yichen Huang, Peter J. Castaldi, Craig P. Hersh, Dawn L. DeMeo, Edwin K. Silverman, Paola Paci

    Published in Heliyon (2024-05-01)
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  7. 7

    Hepatitis C and HIV detection by blood RNA-sequencing in cohort of smokers by Jarrett D. Morrow, Peter J. Castaldi, Robert P. Chase, Jeong H. Yun, Gregory L. Kinney, Edwin K. Silverman, Craig P. Hersh

    Published in Scientific Reports (2023-01-01)
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  8. 8

    B-cell immune repertoire sequencing in tobacco cigarette smoking, vaping, and chronic obstructive pulmonary disease in the COPDGene cohort by Matthew Moll, Matthew Moll, Matthew Moll, Matthew Moll, Zhonghui Xu, Adel Boueiz, Adel Boueiz, Adel Boueiz, Min Hyung Ryu, Min Hyung Ryu, Edwin K. Silverman, Edwin K. Silverman, Edwin K. Silverman, Michael H. Cho, Michael H. Cho, Michael H. Cho, Craig P. Hersh, Craig P. Hersh, Craig P. Hersh, Maor Sauler, Francesca Polverino, Gregory L. Kinney, Jeffrey L. Curtis, Jeffrey L. Curtis, Laura E. Crotty-Alexander, Laura E. Crotty-Alexander, Christopher Vollmers, Peter J. Castaldi, Peter J. Castaldi, Peter J. Castaldi

    Published in Frontiers in Immunology (2025-05-01)
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  9. 9

    Blood cell ratio biomarkers of systemic inflammation in chronic obstructive pulmonary disease by Kaman So, Aabida Saferali, Jeong H. Yun, Min Hyung Ryu, Enrico Schiavi, Peter J. Castaldi, Lisa Ruvuna, Russell P. Bowler, Jeffrey L. Curtis, Craig P. Hersh

    Published in Respiratory Research (2026-03-01)
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  10. 10

    Improved prediction of smoking status via isoform-aware RNA-seq deep learning models. by Zifeng Wang, Aria Masoomi, Zhonghui Xu, Adel Boueiz, Sool Lee, Tingting Zhao, Russell Bowler, Michael Cho, Edwin K Silverman, Craig Hersh, Jennifer Dy, Peter J Castaldi

    Published in PLoS Computational Biology (2021-10-01)
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  11. 11

    Clustering-based COPD subtypes have distinct longitudinal outcomes and multi-omics biomarkers by Russell Bowler, Katherine Pratte, Andrew Gregory, Craig P Hersh, Peter J Castaldi, Aabida Saferali, Sool Lee, Robert Chase, Jeong Yun, Zhonghui Xu, Congjian Liu, Edwin Silverman, Adel Boueiz

    Published in BMJ Open Respiratory Research (2022-02-01)
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  12. 12

    Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. by Michele Gentili, Kimberly Glass, Enrico Maiorino, Brian D Hobbs, Zhonghui Xu, Peter J Castaldi, Michael H Cho, Craig P Hersh, Dandi Qiao, Jarrett D Morrow, Vincent J Carey, John Platig, Edwin K Silverman

    Published in PLoS Computational Biology (2024-10-01)
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  13. 13

    Identifying chronic obstructive pulmonary disease subtypes using multi-trait geneticsResearch in context by Andrey Ziyatdinov, Brian D. Hobbs, Samir Kanaan-Izquierdo, Matthew Moll, Phuwanat Sakornsakolpat, Nick Shrine, Jing Chen, Kijoung Song, Russell P. Bowler, Peter J. Castaldi, Martin D. Tobin, Peter Kraft, Edwin K. Silverman, Hanna Julienne, Michael H. Cho, Hugues Aschard

    Published in EBioMedicine (2025-03-01)
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  14. 14

    Network-based analysis reveals novel gene signatures in peripheral blood of patients with chronic obstructive pulmonary disease by Ma’en Obeidat, Yunlong Nie, Virginia Chen, Casey P. Shannon, Anand Kumar Andiappan, Bernett Lee, Olaf Rotzschke, Peter J. Castaldi, Craig P. Hersh, Nick Fishbane, Raymond T. Ng, Bruce McManus, Bruce E. Miller, Stephen Rennard, Peter D. Paré, Don D. Sin

    Published in Respiratory Research (2017-04-01)
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  15. 15

    Computational deconvolution of cell type-specific gene expression in COPD and IPF lungs reveals disease severity associations by Min Hyung Ryu, Jeong H. Yun, Kangjin Kim, Michele Gentili, Auyon Ghosh, Frank Sciurba, Lucas Barwick, Andrew Limper, Gerard Criner, Kevin K. Brown, Robert Wise, Fernando J. Martinez, Kevin R. Flaherty, Michael H. Cho, Peter J. Castaldi, Dawn L. DeMeo, Edwin K. Silverman, Craig P. Hersh, Jarrett D. Morrow

    Published in BMC Genomics (2024-12-01)
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  16. 16

    Analysis of genetically driven alternative splicing identifies FBXO38 as a novel COPD susceptibility gene. by Aabida Saferali, Jeong H Yun, Margaret M Parker, Phuwanat Sakornsakolpat, Robert P Chase, Andrew Lamb, Brian D Hobbs, Marike H Boezen, Xiangpeng Dai, Kim de Jong, Terri H Beaty, Wenyi Wei, Xiaobo Zhou, Edwin K Silverman, Michael H Cho, Peter J Castaldi, Craig P Hersh, COPDGene Investigators, International COPD Genetics Consortium Investigators

    Published in PLoS Genetics (2019-07-01)
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  17. 17

    Polygenic and transcriptional risk scores identify chronic obstructive pulmonary disease subtypes in the COPDGene and ECLIPSE cohort studiesResearch in context by Matthew Moll, Julian Hecker, John Platig, Jingzhou Zhang, Auyon J. Ghosh, Katherine A. Pratte, Rui-Sheng Wang, Davin Hill, Iain R. Konigsberg, Joe W. Chiles, III, Craig P. Hersh, Peter J. Castaldi, Kimberly Glass, Jennifer G. Dy, Don D. Sin, Ruth Tal-Singer, Majd Mouded, Stephen I. Rennard, Gary P. Anderson, Gregory L. Kinney, Russell P. Bowler, Jeffrey L. Curtis, Merry-Lynn McDonald, Edwin K. Silverman, Brian D. Hobbs, Michael H. Cho

    Published in EBioMedicine (2024-12-01)
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  18. 18

    Soluble receptor for advanced glycation end products (sRAGE) as a biomarker of COPD by Katherine A. Pratte, Jeffrey L. Curtis, Katerina Kechris, David Couper, Michael H. Cho, Edwin K. Silverman, Dawn L. DeMeo, Frank C. Sciurba, Yingze Zhang, Victor E. Ortega, Wanda K. O’Neal, Lucas A. Gillenwater, David A. Lynch, Eric A. Hoffman, John D. Newell, Alejandro P. Comellas, Peter J. Castaldi, Bruce E. Miller, Simon D. Pouwels, Nick H. T. ten Hacken, Rainer Bischoff, Frank Klont, Prescott G. Woodruff, Robert Paine, R. Graham Barr, John Hoidal, Claire M. Doerschuk, Jean-Paul Charbonnier, Ruby Sung, Nicholas Locantore, John G. Yonchuk, Sean Jacobson, Ruth Tal-singer, Debbie Merrill, Russell P. Bowler

    Published in Respiratory Research (2021-04-01)
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