Search Results - Peter W. Laird

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  1. 1

    Rapid and quantitative method of allele-specific DNA methylation analysis by Hui-Lee Wong, Hyang-Min Byun, Jennifer M. Kwan, Mihaela Campan, Sue A. Ingles, Peter W. Laird, Allen S. Yang

    Published in BioTechniques (2006-12-01)
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  2. 2

    Analysis of the association between CIMP and BRAF in colorectal cancer by DNA methylation profiling. by Toshinori Hinoue, Daniel J Weisenberger, Fei Pan, Mihaela Campan, Myungjin Kim, Joanne Young, Vicki L Whitehall, Barbara A Leggett, Peter W Laird

    Published in PLoS ONE (2009-12-01)
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  3. 3

    Epigenetic subgroups of esophageal and gastric adenocarcinoma with differential GATA5 DNA methylation associated with clinical and lifestyle factors. by Xinhui Wang, Gyeong Hoon Kang, Mihaela Campan, Daniel J Weisenberger, Tiffany I Long, Wendy Cozen, Leslie Bernstein, Anna H Wu, Kimberly D Siegmund, Darryl Shibata, Peter W Laird

    Published in PLoS ONE (2011-01-01)
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  4. 4

    Epigenetic analysis of KSHV latent and lytic genomes. by Zsolt Toth, Dennis T Maglinte, Sun Hwa Lee, Hye-Ra Lee, Lai-Yee Wong, Kevin F Brulois, Stacy Lee, Jonathan D Buckley, Peter W Laird, Victor E Marquez, Jae U Jung

    Published in PLoS Pathogens (2010-07-01)
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  5. 5

    Comprehensive evaluation of the Infinium human MethylationEPIC v2 BeadChip by Diljeet Kaur, Sol Moe Lee, David Goldberg, Nathan J. Spix, Toshinori Hinoue, Hong-Tao Li, Varun B. Dwaraka, Ryan Smith, Hui Shen, Gangning Liang, Nicole Renke, Peter W. Laird, Wanding Zhou

    Published in Epigenetics Communications (2023-09-01)
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  6. 6

    High-coverage allele-resolved single-cell DNA methylation profiling reveals cell lineage, X-inactivation state, and replication dynamics by Nathan J. Spix, Walid Abi Habib, Zhouwei Zhang, Emily Eugster, Hsiao-yun Milliron, David Sokol, KwangHo Lee, Paula A. Nolte, Jamie L. Endicott, Kelly F. Krzyzanowski, Toshinori Hinoue, Jacob Morrison, Benjamin K. Johnson, Wanding Zhou, Hui Shen, Peter W. Laird

    Published in Nature Communications (2025-07-01)
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  7. 7

    Genome-scale discovery of DNA-methylation biomarkers for blood-based detection of colorectal cancer. by Christopher P E Lange, Mihaela Campan, Toshinori Hinoue, Roderick F Schmitz, Andrea E van der Meulen-de Jong, Hilde Slingerland, Peter J M J Kok, Cornelis M van Dijk, Daniel J Weisenberger, Hui Shen, Robertus A E M Tollenaar, Peter W Laird

    Published in PLoS ONE (2012-01-01)
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  8. 8

    Microcell-Mediated Chromosome Transfer Identifies EPB41L3 as a Functional Suppressor of Epithelial Ovarian Cancers by Dimitra Dafou, Barbara Grun, John Sinclair, Kate Lawrenson, Elizabeth C. Benjamin, Estrid Hogdall, Susanne Kruger-Kjaer, Lise Christensen, Heidi M. Sowter, Ahmed Al-Attar, Richard Edmondson, Stephen Darby, Andrew Berchuck, Peter W. Laird, C. Leigh Pearce, Susan J. Ramus, Ian J. Jacobs, Simon A. Gayther

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  9. 9

    Genome-scale screen for DNA methylation-based detection markers for ovarian cancer. by Mihaela Campan, Melissa Moffitt, Sahar Houshdaran, Hui Shen, Martin Widschwendter, Günter Daxenbichler, Tiffany Long, Christian Marth, Ite A Laird-Offringa, Michael F Press, Louis Dubeau, Kimberly D Siegmund, Anna H Wu, Susan Groshen, Uma Chandavarkar, Lynda D Roman, Andrew Berchuck, Celeste L Pearce, Peter W Laird

    Published in PLoS ONE (2011-01-01)
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  10. 10

    Protocol for obtaining cancer type and subtype predictions using subSCOPE by Jasleen K. Grewal, A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan A. Lee, Christina Yau, Bahar Tercan, Mauro A.A. Castro, Christopher C. Benz, Jean C. Zenklusen, Andrew D. Cherniack, Peter W. Laird, Steven J.M. Jones, Theo A. Knijnenburg, Mauro A.A. Castro, Vinicius S. Chagas, Victor H. Apolonio, Verena Friedl, Joshua M. Stuart, Vladislav Uzunangelov, Christopher K. Wong, Jesper B. Andersen, Andrew D. Cherniack, Galen F. Gao, Gad Getz, Stephanie H. Hoyt, Whijae Roh, Lindsay Westlake, Christopher C. Benz, Jasleen K. Grewal, Steven J.M. Jones, A. Gordon Robertson, Samantha J. Caesar-Johnson, John A. Demchok, Ina Felau, Anab Kemal, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Rehan Akbani, Bradley M. Broom, Zhenlin Ju, Andre Schultz, Akinyemi I. Ojesina, Katherine A. Hoadley, Avantika Lal, Daniele Ramazzotti, Chen Wang, Alexander J. Lazar, Lewis R. Roberts, Taek-Kyun Kim, Ilya Shmulevich, Bahar Tercan, Paulos Charonyktakis, Vincenzo Lagani, Ioannis Tsamardinos, Esther Drill, Ronglai Shen, Martin L. Ferguson, Kami E. Chiotti, Kyle Ellrott, Brian J. Karlberg, Jordan A. Lee, Eve Lowenstein, Adam Struck, Paul T. Spellman, Christina Yau, Toshinori Hinoue, Peter W. Laird

    Published in STAR Protocols (2025-06-01)
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  11. 11

    Analysis of germline-driven ancestry-associated gene expression in cancers by Nyasha Chambwe, Rosalyn W. Sayaman, Donglei Hu, Scott Huntsman, Anab Kemal, Samantha Caesar-Johnson, Jean C. Zenklusen, Elad Ziv, Rameen Beroukhim, Andrew D. Cherniack, Jian Carrot-Zhang, Ashton C. Berger, Seunghun Han, Matthew Meyerson, Jeffrey S. Damrauer, Katherine A. Hoadley, Ina Felau, John A. Demchok, Michael K.A. Mensah, Roy Tarnuzzer, Zhining Wang, Liming Yang, Theo A. Knijnenburg, A. Gordon Robertson, Christina Yau, Christopher Benz, Kuan-lin Huang, Justin Y. Newberg, Garrett M. Frampton, R. Jay Mashl, Li Ding, Alessandro Romanel, Francesca Demichelis, Wanding Zhou, Peter W. Laird, Hui Shen, Christopher K. Wong, Joshua M. Stuart, Alexander J. Lazar, Xiuning Le, Ninad Oak

    Published in STAR Protocols (2022-09-01)
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  12. 12

    Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods by Bahar Tercan, Victor H. Apolonio, Vinicius S. Chagas, Christopher K. Wong, Jordan A. Lee, Christina Yau, Christopher C. Benz, Joshua M. Stuart, Brian J. Karlberg, Kyle Ellrott, Jasleen K. Grewal, Steven J.M. Jones, Jean C. Zenklusen, A. Gordon Robertson, Peter W. Laird, Andrew D. Cherniack, Mauro A.A. Castro, Theo A. Knijnenberg, Mauro A.A. Castro, Vinicius S. Chagas, Victor H. Apolonio, Verena Friedl, Joshua M. Stuart, Vladislav Uzunangelov, Christopher K. Wong, Rameen Beroukhim, Andrew D. Cherniack, Galen F. Gao, Gad Getz, Stephanie H. Hoyt, Xavier Loinaz, Whijae Roh, Chip Stewart, Lindsay Westlake, Christopher C. Benz, Jasleen K. Grewal, Steven J.M. Jones, A. Gordon Robertson, Samantha J. Caesar-Johnson, John A. Demchok, Ina Felau, Anab Kemal, Roy Tarnuzzer, Peggy I. Wang, Zhining Wang, Liming Yang, Jean C. Zenklusen, Rehan Akbani, Bradley M. Broom, Zhenlin Ju, Andre Schultz, Akinyemi I. Ojesina, Katherine A. Hoadley, Avantika Lal, Daniele Ramazzotti, Chen Wang, Alexander J. Lazar, Lewis R. Roberts, Bahar Tercan, Taek-Kyun Kim, Ilya Shmulevich, Paulos Charonyktakis, Vincenzo Lagani, Ioannis Tsamardinos, Esther Drill, Ronglai Shen, Martin L. Ferguson, Kami E. Chiotti, Kyle Ellrott, Brian J. Karlberg, Jordan A. Lee, Eve Lowenstein, Paul T. Spellman, Adam Struck, Christina Yau, D. Neil Hayes, Toshinori Hinoue, Hui Shen, Peter W. Laird

    Published in STAR Protocols (2025-06-01)
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  13. 13

    Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles by Bhavneet Bhinder, Verena Friedl, Sunantha Sethuraman, Davide Risso, Kami E. Chiotti, R. Jay Mashl, Kyle P. Ellrott, Jordan A. Lee, Christopher K. Wong, Kofi Gyan, Aditya Deshpande, Marcin Imielinski, Rohan Bareja, Josh Stuart, Myron Peto, Katherine A. Hoadley, Alexander J. Lazar, Andrew D. Cherniack, Jingchun Zhu, Shaolong Cao, Mark Rubin, Wenyi Wang, Oliver F. Bathe, Nicolas Robine, Li Ding, Peter W. Laird, Wanding Zhou, Hui Shen, Vésteinn Thorsson, Jen Jen Yeh, Matthew H. Bailey, Daniel Cui Zhou, Xianlu L. Peng, Mary Goldman, Yongsheng Li, Anil Korkut, Nidhi Sahni, D. Neil Hayes, Michael K. A. Mensah, Ina Felau, Anab Kemal, Samantha Caesar-Johnson, John A. Demchok, Liming Yang, Martin L. Ferguson, Roy Tarnuzzer, Zhining Wang, Jean C. Zenklusen, The Cancer Genome Atlas Analysis Network, Paul Spellman, Olivier Elemento

    Published in Scientific Reports (2025-07-01)
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  14. 14

    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway by Jian Carrot-Zhang, Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago Chedraoui Silva, Christopher K. Wong, Hyo Young Choi, Ina Felau, A. Gordon Robertson, Mauro A.A. Castro, Lisui Bao, Esther Rheinbay, Eric Minwei Liu, Tuan Trieu, David Haan, Christina Yau, Toshinori Hinoue, Yuexin Liu, Ofer Shapira, Kiran Kumar, Karen L. Mungall, Hailei Zhang, Jake June-Koo Lee, Ashton Berger, Galen F. Gao, Binyamin Zhitomirsky, Wen-Wei Liang, Meng Zhou, Sitapriya Moorthi, Alice H. Berger, Eric A. Collisson, Michael C. Zody, Li Ding, Andrew D. Cherniack, Gad Getz, Olivier Elemento, Christopher C. Benz, Josh Stuart, J.C. Zenklusen, Rameen Beroukhim, Jason C. Chang, Joshua D. Campbell, D. Neil Hayes, Lixing Yang, Peter W. Laird, John N. Weinstein, David J. Kwiatkowski, Ming S. Tsao, William D. Travis, Ekta Khurana, Benjamin P. Berman, Katherine A. Hoadley, Nicolas Robine, Matthew Meyerson, Ramaswamy Govindan, Marcin Imielinski

    Published in Cell Reports (2021-02-01)
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