Search Results - R. Wick

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  1. 1

    Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 4; peer review: 4 approved] by Ryan R. Wick, Kathryn E. Holt

    Published in F1000Research (2021-02-01)
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  2. 2

    Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 1; peer review: 2 approved] by Ryan R. Wick, Kathryn E. Holt

    Published in F1000Research (2019-12-01)
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  3. 3

    Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing by Ryan R. Wick, Louise M. Judd, Kathryn E. Holt

    Published in PLoS Computational Biology (2023-03-01)
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  4. 4

    Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. by Ryan R Wick, Louise M Judd, Kathryn E Holt

    Published in PLoS Computational Biology (2023-03-01)
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  5. 5

    On equilibrating non-periodic molecular dynamics samples for coupled particle-continuum simulations of amorphous polymers by Felix Weber, Maximilian Ries, Christof Bauer, Christian R. Wick, Sebastian Pfaller

    Published in Forces in Mechanics (2023-02-01)
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  6. 6

    Evaluating the predictive character of the method of constrained geometries simulate external force with density functional theory by Christian R. Wick, Ece Topraksal, David M. Smith, Ana-Sunčana Smith

    Published in Forces in Mechanics (2022-12-01)
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  7. 7

    Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. by Ryan R Wick, Louise M Judd, Claire L Gorrie, Kathryn E Holt

    Published in PLoS Computational Biology (2017-06-01)
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  8. 8

    The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns by Sonja I. Repetti, Christopher J. Jackson, Louise M. Judd, Ryan R. Wick, Kathryn E. Holt, Heroen Verbruggen

    Published in PeerJ (2020-01-01)
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  9. 9

    Rapid Whole Genome Sequencing of Serotype K1 Hypervirulent Klebsiella pneumoniae from an Undocumented Chinese Migrant by C. K. Macleod, F. A. Khokhar, B. Warne, R. Wick, R. Butcher, B. Cassimon, P. Hayden, K. Holt, M. E. Török

    Published in Case Reports in Infectious Diseases (2021-01-01)
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  10. 10

    ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting by Jane Hawkey, Kelly L. Wyres, Louise M. Judd, Taylor Harshegyi, Luke Blakeway, Ryan R. Wick, Adam W. J. Jenney, Kathryn E. Holt

    Published in Genome Medicine (2022-08-01)
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  11. 11

    Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data by Michael B Hall, Ryan R Wick, Louise M Judd, An N Nguyen, Eike J Steinig, Ouli Xie, Mark Davies, Torsten Seemann, Timothy P Stinear, Lachlan Coin

    Published in eLife (2024-10-01)
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  12. 12

    Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. by Kelly L Wyres, Ryan R Wick, Louise M Judd, Roni Froumine, Alex Tokolyi, Claire L Gorrie, Margaret M C Lam, Sebastián Duchêne, Adam Jenney, Kathryn E Holt

    Published in PLoS Genetics (2019-04-01)
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  13. 13

    Targeted sequencing of Enterobacterales bacteria using CRISPR-Cas9 enrichment and Oxford Nanopore Technologies by Hugh Cottingham, Louise M. Judd, Jessica A. Wisniewski, Ryan R. Wick, Thomas D. Stanton, Ben Vezina, Nenad Macesic, Anton Y. Peleg, Iruka N. Okeke, Kathryn E. Holt, Jane Hawkey

    Published in mSystems (2025-02-01)
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  14. 14

    Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae by Margaret M. C. Lam, Stephen M. Salisbury, Logan P. Treat, Ryan R. Wick, Louise M. Judd, Kelly L. Wyres, Sylvain Brisse, Kimberly A. Walker, Virginia L. Miller, Kathryn E. Holt

    Published in Genome Medicine (2025-04-01)
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  15. 15

    The complete genome sequence of the crayfish pathogen Candidatus Paracoxiella cheracis n.g. n.sp. provides insight into pathogenesis and the phylogeny of the Coxiellaceae family by Danielle J. Ingle, Calum J. Walsh, Genevieve R. Samuel, Ryan R. Wick, Nadav Davidovich, Eleonora Fiocchi, Louise M. Judd, Jennifer Elliman, Leigh Owens, Timothy P. Stinear, Andrea Basso, Tobia Pretto, Hayley J. Newton

    Published in mSphere (2025-04-01)
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  16. 16

    Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination by Margaret M. C. Lam, Kelly L. Wyres, Sebastian Duchêne, Ryan R. Wick, Louise M. Judd, Yunn-Hwen Gan, Chu-Han Hoh, Sophia Archuleta, James S. Molton, Shirin Kalimuddin, Tse Hsien Koh, Virginie Passet, Sylvain Brisse, Kathryn E. Holt

    Published in Nature Communications (2018-07-01)
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  17. 17

    Genomic surveillance of antimicrobial resistant bacterial colonisation and infection in intensive care patients by Kelly L. Wyres, Jane Hawkey, Mirianne Mirčeta, Louise M. Judd, Ryan R. Wick, Claire L. Gorrie, Nigel F. Pratt, Jill S. Garlick, Kerrie M. Watson, David V. Pilcher, Steve A. McGloughlin, Iain J. Abbott, Nenad Macesic, Denis W. Spelman, Adam W. J. Jenney, Kathryn E. Holt

    Published in BMC Infectious Diseases (2021-07-01)
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  18. 18

    A genome-wide One Health study of Klebsiella pneumoniae in Norway reveals overlapping populations but few recent transmission events across reservoirs by Marit A. K. Hetland, Mia A. Winkler, Håkon P. Kaspersen, Fredrik Håkonsholm, Ragna-Johanne Bakksjø, Eva Bernhoff, Jose F. Delgado-Blas, Sylvain Brisse, Annapaula Correia, Aasmund Fostervold, Margaret M. C. Lam, Bjørn-Tore Lunestad, Nachiket P. Marathe, Niclas Raffelsberger, Ørjan Samuelsen, Marianne Sunde, Arnfinn Sundsfjord, Anne Margrete Urdahl, Ryan R. Wick, Iren H. Löhr, Kathryn E. Holt

    Published in Genome Medicine (2025-04-01)
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