Search Results - Richard A Neher

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  1. 1

    Eco-evolutionary dynamics of adapting pathogens and host immunity by Pierre Barrat-Charlaix, Richard A Neher

    Published in eLife (2024-12-01)
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  2. 2

    Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition by Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Richard A. Neher, Trevor Bedford, Trevor Bedford, John Huddleston

    Published in Frontiers in Bioinformatics (2023-03-01)
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  3. 3

    TreeKnit: Inferring ancestral reassortment graphs of influenza viruses. by Pierre Barrat-Charlaix, Timothy G Vaughan, Richard A Neher

    Published in PLoS Computational Biology (2022-08-01)
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  4. 4

    Predicting evolution from the shape of genealogical trees by Richard A Neher, Colin A Russell, Boris I Shraiman

    Published in eLife (2014-11-01)
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  5. 5

    Potential impact of seasonal forcing on a SARS-CoV-2 pandemic by Richard A. Neher, Robert Dyrdak, Valentin Druelle, Emma B. Hodcroft, Jan Albert

    Published in Swiss Medical Weekly (2020-03-01)
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  6. 6

    Estimating Re and overdispersion in secondary cases from the size of identical sequence clusters of SARS-CoV-2. by Emma B Hodcroft, Martin S Wohlfender, Richard A Neher, Julien Riou, Christian L Althaus

    Published in PLoS Computational Biology (2025-04-01)
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  7. 7

    Establishment and stability of the latent HIV-1 DNA reservoir by Johanna Brodin, Fabio Zanini, Lina Thebo, Christa Lanz, Göran Bratt, Richard A Neher, Jan Albert

    Published in eLife (2016-11-01)
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  8. 8

    2019-Novel Coronavirus (2019-nCoV): estimating the case fatality rate – a word of caution by Manuel Battegay, Richard Kuehl, Sarah Tschudin-Sutter, Hans H. Hirsch, Andreas F. Widmer, Richard A. Neher

    Published in Swiss Medical Weekly (2020-02-01)
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  9. 9

    Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2 by Jana S Huisman, Jérémie Scire, Daniel C Angst, Jinzhou Li, Richard A Neher, Marloes H Maathuis, Sebastian Bonhoeffer, Tanja Stadler

    Published in eLife (2022-08-01)
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  10. 10

    Asynchrony between virus diversity and antibody selection limits influenza virus evolution by Dylan H Morris, Velislava N Petrova, Fernando W Rossine, Edyth Parker, Bryan T Grenfell, Richard A Neher, Simon A Levin, Colin A Russell

    Published in eLife (2020-11-01)
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  11. 11

    Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform by Adrian Egli, Dominique S. Blanc, Gilbert Greub, Peter M. Keller, Vladimir Lazarevic, Aitana Lebrand, Stephen Leib, Richard A. Neher, Vincent Perreten, Alban Ramette, Jacques Schrenzel, Roger Stephan, Karoline Wagner, Daniel Wüthrich, Ioannis Xenarios

    Published in Swiss Medical Weekly (2019-01-01)
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  12. 12

    Evolution, geographic spreading, and demographic distribution of Enterovirus D68. by Emma B Hodcroft, Robert Dyrdak, Cristina Andrés, Adrian Egli, Josiane Reist, Diego García Martínez de Artola, Julia Alcoba-Flórez, Hubert G M Niesters, Andrés Antón, Randy Poelman, Marijke Reynders, Elke Wollants, Richard A Neher, Jan Albert

    Published in PLoS Pathogens (2022-05-01)
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  13. 13

    Incomplete inhibition of HIV infection results in more HIV infected lymph node cells by reducing cell death by Laurelle Jackson, Jessica Hunter, Sandile Cele, Isabella Markham Ferreira, Andrew C Young, Farina Karim, Rajhmun Madansein, Kaylesh J Dullabh, Chih-Yuan Chen, Noel J Buckels, Yashica Ganga, Khadija Khan, Mikael Boulle, Gila Lustig, Richard A Neher, Alex Sigal

    Published in eLife (2018-03-01)
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  14. 14

    Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution by John Huddleston, John R Barnes, Thomas Rowe, Xiyan Xu, Rebecca Kondor, David E Wentworth, Lynne Whittaker, Burcu Ermetal, Rodney Stuart Daniels, John W McCauley, Seiichiro Fujisaki, Kazuya Nakamura, Noriko Kishida, Shinji Watanabe, Hideki Hasegawa, Ian Barr, Kanta Subbarao, Pierre Barrat-Charlaix, Richard A Neher, Trevor Bedford

    Published in eLife (2020-09-01)
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  15. 15

    Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics. by Nicola F Müller, Daniel Wüthrich, Nina Goldman, Nadine Sailer, Claudia Saalfrank, Myrta Brunner, Noémi Augustin, Helena Mb Seth-Smith, Yvonne Hollenstein, Mohammedyaseen Syedbasha, Daniela Lang, Richard A Neher, Olivier Dubuis, Michael Naegele, Andreas Buser, Christian H Nickel, Nicole Ritz, Andreas Zeller, Brian M Lang, James Hadfield, Trevor Bedford, Manuel Battegay, Rita Schneider-Sliwa, Adrian Egli, Tanja Stadler

    Published in PLoS Pathogens (2020-11-01)
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  16. 16

    Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Level by Stephanie Goya, Christopher Ruis, Richard A. Neher, Adam Meijer, Ammar Aziz, Angie S. Hinrichs, Anne von Gottberg, Cornelius Roemer, Daniel G. Amoako, Dolores Acuña, Jakob McBroome, James R. Otieno, Jinal N. Bhiman, Josie Everatt, Juan C. Muñoz-Escalante, Kaat Ramaekers, Kate Duggan, Lance D. Presser, Laura Urbanska, Marietjie Venter, Nicole Wolter, Teresa C.T. Peret, Vahid Salimi, Varsha Potdar, Vítor Borges, Mariana Viegas

    Published in Emerging Infectious Diseases (2024-08-01)
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  17. 17

    Evolution and neutralization escape of the SARS-CoV-2 BA.2.86 subvariant by Khadija Khan, Gila Lustig, Cornelius Römer, Kajal Reedoy, Zesuliwe Jule, Farina Karim, Yashica Ganga, Mallory Bernstein, Zainab Baig, Laurelle Jackson, Boitshoko Mahlangu, Anele Mnguni, Ayanda Nzimande, Nadine Stock, Dikeledi Kekana, Buhle Ntozini, Cindy van Deventer, Terry Marshall, Nithendra Manickchund, Bernadett I. Gosnell, Richard J. Lessells, Quarraisha Abdool Karim, Salim S. Abdool Karim, Mahomed-Yunus S. Moosa, Tulio de Oliveira, Anne von Gottberg, Nicole Wolter, Richard A. Neher, Alex Sigal

    Published in Nature Communications (2023-12-01)
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  18. 18

    Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus. by Christian Happi, Ifedayo Adetifa, Placide Mbala, Richard Njouom, Emmanuel Nakoune, Anise Happi, Nnaemeka Ndodo, Oyeronke Ayansola, Gerald Mboowa, Trevor Bedford, Richard A Neher, Cornelius Roemer, Emma Hodcroft, Houriiyah Tegally, Áine O'Toole, Andrew Rambaut, Oliver Pybus, Moritz U G Kraemer, Eduan Wilkinson, Joana Isidro, Vítor Borges, Miguel Pinto, João Paulo Gomes, Lucas Freitas, Paola C Resende, Raphael T C Lee, Sebastian Maurer-Stroh, Cheryl Baxter, Richard Lessells, Ahmed E Ogwell, Yenew Kebede, Sofonias K Tessema, Tulio de Oliveira

    Published in PLoS Biology (2022-08-01)
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  19. 19

    SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021—Implementation of Swiss-Wide Diagnostic Screening and Whole Genome S... by Ana Rita Goncalves Cabecinhas, Tim Roloff, Madlen Stange, Claire Bertelli, Michael Huber, Alban Ramette, Chaoran Chen, Sarah Nadeau, Yannick Gerth, Sabine Yerly, Onya Opota, Trestan Pillonel, Tobias Schuster, Cesar M. J. A. Metzger, Jonas Sieber, Michael Bel, Nadia Wohlwend, Christian Baumann, Michel C. Koch, Pascal Bittel, Karoline Leuzinger, Myrta Brunner, Franziska Suter-Riniker, Livia Berlinger, Kirstine K. Søgaard, Christiane Beckmann, Christoph Noppen, Maurice Redondo, Ingrid Steffen, Helena M. B. Seth-Smith, Alfredo Mari, Reto Lienhard, Martin Risch, Oliver Nolte, Isabella Eckerle, Gladys Martinetti Lucchini, Emma B. Hodcroft, Richard A. Neher, Tanja Stadler, Hans H. Hirsch, Stephen L. Leib, Lorenz Risch, Laurent Kaiser, Alexandra Trkola, Gilbert Greub, Adrian Egli

    Published in Microorganisms (2021-03-01)
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  20. 20

    Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2. by Chantal B F Vogels, Mallery I Breban, Isabel M Ott, Tara Alpert, Mary E Petrone, Anne E Watkins, Chaney C Kalinich, Rebecca Earnest, Jessica E Rothman, Jaqueline Goes de Jesus, Ingra Morales Claro, Giulia Magalhães Ferreira, Myuki A E Crispim, Brazil-UK CADDE Genomic Network, Lavanya Singh, Houriiyah Tegally, Ugochukwu J Anyaneji, Network for Genomic Surveillance in South Africa, Emma B Hodcroft, Christopher E Mason, Gaurav Khullar, Jessica Metti, Joel T Dudley, Matthew J MacKay, Megan Nash, Jianhui Wang, Chen Liu, Pei Hui, Steven Murphy, Caleb Neal, Eva Laszlo, Marie L Landry, Anthony Muyombwe, Randy Downing, Jafar Razeq, Tulio de Oliveira, Nuno R Faria, Ester C Sabino, Richard A Neher, Joseph R Fauver, Nathan D Grubaugh

    Published in PLoS Biology (2021-05-01)
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