Search Results - Rob Patro

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  1. 1

    Algorithms meet sequencing technologies – 10th edition of the RECOMB-Seq workshop by Rob Patro, Leena Salmela

    Published in iScience (2021-01-01)
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  2. 2

    Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2 by Jamshed Khan, Marek Kokot, Sebastian Deorowicz, Rob Patro

    Published in Genome Biology (2022-09-01)
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  3. 3

    TreeTerminus —creating transcript trees using inferential replicate counts by Noor Pratap Singh, Michael I. Love, Rob Patro

    Published in iScience (2023-06-01)
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  4. 4

    Preprocessing choices affect RNA velocity results for droplet scRNA-seq data. by Charlotte Soneson, Avi Srivastava, Rob Patro, Michael B Stadler

    Published in PLoS Computational Biology (2021-01-01)
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  5. 5

    Alevin efficiently estimates accurate gene abundances from dscRNA-seq data by Avi Srivastava, Laraib Malik, Tom Smith, Ian Sudbery, Rob Patro

    Published in Genome Biology (2019-03-01)
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  6. 6

    Fast, parallel, and cache-friendly suffix array construction by Jamshed Khan, Tobias Rubel, Erin Molloy, Laxman Dhulipala, Rob Patro

    Published in Algorithms for Molecular Biology (2024-04-01)
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  7. 7

    Fulgor: a fast and compact k-mer index for large-scale matching and color queries by Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro

    Published in Algorithms for Molecular Biology (2024-01-01)
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  8. 8

    Tximeta: Reference sequence checksums for provenance identification in RNA-seq. by Michael I Love, Charlotte Soneson, Peter F Hickey, Lisa K Johnson, N Tessa Pierce, Lori Shepherd, Martin Morgan, Rob Patro

    Published in PLoS Computational Biology (2020-02-01)
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  9. 9

    SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty by Euphy Y. Wu, Noor P. Singh, Kwangbom Choi, Mohsen Zakeri, Matthew Vincent, Gary A. Churchill, Cheryl L. Ackert-Bicknell, Rob Patro, Michael I. Love

    Published in Genome Biology (2023-07-01)
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