Search Results - Robert C. Edgar

MUSCLE (alignment software)

A flowchart depicting the steps the MUSCLE algorithm takes in order to produce an alignment. MUltiple Sequence Comparison by Log-Expectation (MUSCLE) is a computer software for multiple sequence alignment of protein and nucleotide sequences. It is licensed as public domain. The method was published by Robert C. Edgar in two papers in 2004. The first paper, published in ''Nucleic Acids Research'', introduced the sequence alignment algorithm. The second paper, published in ''BMC Bioinformatics'', presented more technical details. MUSCLE up to version 3 uses a progressive-refinement method. Since version 5 it uses a hidden Markov model similar to ProbCons. Provided by Wikipedia
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  1. 1

    Accuracy of microbial community diversity estimated by closed- and open-reference OTUs by Robert C. Edgar

    Published in PeerJ (2017-10-01)
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  2. 2

    Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences by Robert C. Edgar

    Published in PeerJ (2018-04-01)
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  3. 3

    Hybrids of RNA viruses and viroid-like elements replicate in fungi by Marco Forgia, Beatriz Navarro, Stefania Daghino, Amelia Cervera, Andreas Gisel, Silvia Perotto, Dilzara N. Aghayeva, Mary F. Akinyuwa, Emanuela Gobbi, Ivan N. Zheludev, Robert C. Edgar, Rayan Chikhi, Massimo Turina, Artem Babaian, Francesco Di Serio, Marcos de la Peña

    Published in Nature Communications (2023-05-01)
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  4. 4

    GMP Manufacturing and IND-Enabling Studies of a Recombinant Hyperimmune Globulin Targeting SARS-CoV-2 by Rena A. Mizrahi, Wendy Y. Lin, Ashley Gras, Ariel R. Niedecken, Ellen K. Wagner, Sheila M. Keating, Nikita Ikon, Vishal A. Manickam, Michael A. Asensio, Jackson Leong, Angelica V. Medina-Cucurella, Emily Benzie, Kyle P. Carter, Yao Chiang, Robert C. Edgar, Renee Leong, Yoong Wearn Lim, Jan Fredrik Simons, Matthew J. Spindler, Kacy Stadtmiller, Nicholas Wayham, Dirk Büscher, Jose Vicente Terencio, Clara Di Germanio, Steven M. Chamow, Charles Olson, Paula A. Pino, Jun-Gyu Park, Amberlee Hicks, Chengjin Ye, Andreu Garcia-Vilanova, Luis Martinez-Sobrido, Jordi B. Torrelles, David S. Johnson, Adam S. Adler

    Published in Pathogens (2022-07-01)
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