Search Results - Ruibang Luo

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  1. 1

    Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP by Huijing Yu, Zhenxian Zheng, Junhao Su, Tak-Wah Lam, Ruibang Luo

    Published in BMC Bioinformatics (2023-08-01)
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  2. 2

    LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning by Ruibang Luo, Fritz J. Sedlazeck, Charlotte A. Darby, Stephen M. Kelly, Michael C. Schatz

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  3. 3

    Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing by Yekai Zhou, Amy Wing-Sze Leung, Syed Shakeel Ahmed, Tak-Wah Lam, Ruibang Luo

    Published in BMC Bioinformatics (2022-11-01)
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  4. 4

    Author Correction: cuteFC: regenotyping structural variants through an accurate and efficient force-calling method by Tao Jiang, Shuqi Cao, Yadong Liu, Zhendong Zhang, Bo Liu, Ruibang Luo, Guohua Wang, Yadong Wang

    Published in Genome Biology (2025-09-01)
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  5. 5

    cuteFC: regenotyping structural variants through an accurate and efficient force-calling method by Tao Jiang, Shuqi Cao, Yadong Liu, Zhendong Zhang, Bo Liu, Ruibang Luo, Guohua Wang, Yadong Wang

    Published in Genome Biology (2025-06-01)
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  6. 6

    Assessing the reproducibility, stability, and biological interpretability of multimodal computed tomography image features for prognosis in advanced non‐small cell lung cancer by Jiajun Wang, Gang Dai, Xiufang Ren, Ruichuan Shi, Ruibang Luo, Jianhua Liu, Kexue Deng, Jiangdian Song

    Published in iRADIOLOGY (2024-02-01)
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  7. 7

    Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power by Jingcheng Zhang, Lei Chen, Jinlin Sun, Shumin Li, Yekai Zhou, Zhenqin Wu, Can Li, Zhenxian Zheng, Ruibang Luo

    Published in Nature Communications (2026-04-01)
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  8. 8

    BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU by Ruibang Luo, Yiu-Lun Wong, Wai-Chun Law, Lap-Kei Lee, Jeanno Cheung, Chi-Man Liu, Tak-Wah Lam

    Published in PeerJ (2014-06-01)
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  9. 9

    Transcriptome Analysis of Acute Phase Liver Graft Injury in Liver Transplantation by Nikki P. Lee, Haiyang Wu, Kevin T.P. Ng, Ruibang Luo, Tak-Wah Lam, Chung-Mau Lo, Kwan Man

    Published in Biomedicines (2018-04-01)
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  10. 10

    Integrated modeling framework reveals co-regulation of transcription factors, miRNAs and lncRNAs on cardiac developmental dynamics by Shumin Li, Bin Yan, Binbin Wu, Junhao Su, Jianliang Lu, Tak-Wah Lam, Kenneth R. Boheler, Ellen Ngar-Yun Poon, Ruibang Luo

    Published in Stem Cell Research & Therapy (2023-09-01)
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  11. 11

    Adverse clinical outcomes and immunosuppressive microenvironment of RHO-GTPase activation pattern in hepatocellular carcinoma by Qi Yang, Zewei Zhuo, Xinqi Qiu, Ruibang Luo, Kehang Guo, Huihuan Wu, Rui Jiang, Jingwei Li, Qizhou Lian, Pengfei Chen, Weihong Sha, Hao Chen

    Published in Journal of Translational Medicine (2024-01-01)
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  12. 12

    Ultra-low-coverage genome-wide association study—insights into gestational age using 17,844 embryo samples with preimplantation genetic testing by Shumin Li, Bin Yan, Thomas K. T. Li, Jianliang Lu, Yifan Gu, Yueqiu Tan, Fei Gong, Tak-Wah Lam, Pingyuan Xie, Yuexuan Wang, Ge Lin, Ruibang Luo

    Published in Genome Medicine (2023-02-01)
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  13. 13

    Editorial: Exploration of genetic variation, drug response, and interactions between gastrointestinal disorders and other diseases by Shuangshuang Tong, Shuangshuang Tong, Shuangshuang Tong, Yanlin Lyu, Yanlin Lyu, Ruibang Luo, Felix Leung, Felix Leung, Weihong Sha, Weihong Sha, Weihong Sha, Hao Chen, Hao Chen, Hao Chen

    Published in Frontiers in Pharmacology (2023-09-01)
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  14. 14

    ARGNet: using deep neural networks for robust identification and classification of antibiotic resistance genes from sequences by Yao Pei, Marcus Ho-Hin Shum, Yunshi Liao, Vivian W. Leung, Yu-Nong Gong, David K. Smith, Xiaole Yin, Yi Guan, Ruibang Luo, Tong Zhang, Tommy Tsan-Yuk Lam

    Published in Microbiome (2024-05-01)
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  15. 15

    Investigating shared genetic architecture between inflammatory bowel diseases and primary biliary cholangitis by Wentao Huang, Rui Jiang, Sitao Li, Ruijie Zeng, Yang Li, Yajie Zhang, Shuangshuang Tong, Yanlin Lyu, Jiaxuan Wang, Qizhou Lian, Felix W. Leung, Ruibang Luo, Weihong Sha, Hao Chen

    Published in JHEP Reports (2024-06-01)
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  16. 16

    First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans) by Ruibang Luo, Aleksey Zimin, Rachael Workman, Yunfan Fan, Geo Pertea, Nina Grossman, Maggie P. Wear, Bei Jia, Heather Miller, Arturo Casadevall, Winston Timp, Sean X. Zhang, Steven L. Salzberg

    Published in G3: Genes, Genomes, Genetics (2017-11-01)
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  17. 17

    PET/CT deep learning prognosis for treatment decision support in esophageal squamous cell carcinoma by Jiangdian Song, Jie Zhang, Guichao Liu, Zhexu Guo, Hongxian Liao, Wenhui Feng, Wenxiang Lin, Lei Li, Yi Zhang, Yuxiang Yang, Bin Liu, Ruibang Luo, Hao Chen, Siyun Wang, Jian-Hua Liu

    Published in Insights into Imaging (2024-06-01)
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  18. 18

    Optimizing long term disease prevention with reinforcement learning: a framework for precision lipid control by Yekai Zhou, Ruibang Luo, Joseph Edgar Blais, Kathryn C. B. Tan, David Tak Wai Lui, Kai Hang Yiu, Francisco Tsz Tsun Lai, Eric Yuk Fai Wan, Ching-Lung Cheung, Ian CK Wong, Celine SL Chui

    Published in npj Digital Medicine (2025-08-01)
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  19. 19

    From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics. by Alejandra González-Beltrán, Peter Li, Jun Zhao, Maria Susana Avila-Garcia, Marco Roos, Mark Thompson, Eelke van der Horst, Rajaram Kaliyaperumal, Ruibang Luo, Tin-Lap Lee, Tak-Wah Lam, Scott C Edmunds, Susanna-Assunta Sansone, Philippe Rocca-Serra

    Published in PLoS ONE (2015-01-01)
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  20. 20

    Correction: SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner. by Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu, Xiaoqian Zhu, Edward Wu, Lap-Kei Lee, Haoxiang Lin, Wenjuan Zhu, David W. Cheung, Hing-Fung Ting, Siu-Ming Yiu, Shaoliang Peng, Chang Yu, Yingrui Li, Ruiqiang Li, Tak-Wah Lam

    Published in PLoS ONE (2013-01-01)
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