Search Results - Sam Abbott

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  1. 1

    Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates. by Adrian Lison, Sam Abbott, Jana Huisman, Tanja Stadler

    Published in PLoS Computational Biology (2024-04-01)
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  2. 2

    Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England. by James D Munday, Sam Abbott, Sophie Meakin, Sebastian Funk

    Published in PLoS Computational Biology (2023-09-01)
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  3. 3

    Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England by Quentin J. Leclerc, Emily S. Nightingale, Sam Abbott, CMMID COVID-19 Working Group, Thibaut Jombart

    Published in Scientific Reports (2021-03-01)
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  4. 4

    Scoring epidemiological forecasts on transformed scales. by Nikos I Bosse, Sam Abbott, Anne Cori, Edwin van Leeuwen, Johannes Bracher, Sebastian Funk

    Published in PLoS Computational Biology (2023-08-01)
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  5. 5

    Human judgement forecasting of COVID-19 in the UK [version 2; peer review: 2 approved] by Nikos I. Bosse, Sam Abbott, Johannes Bracher, Sebastian Funk, Anne Cori, Edwin van Leeuwen

    Published in Wellcome Open Research (2024-03-01)
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  6. 6

    EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering. by Ciara Judge, Timothy Vaughan, Timothy Russell, Sam Abbott, Louis du Plessis, Tanja Stadler, Oliver Brady, Sarah Hill

    Published in PLoS Computational Biology (2024-11-01)
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  7. 7

    Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China [version 3; peer review: 2 approved] by Akira Endo, Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group, Sam Abbott, Adam J. Kucharski, Sebastian Funk

    Published in Wellcome Open Research (2020-07-01)
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  8. 8

    Nowcasting the 2022 mpox outbreak in England. by Christopher E Overton, Sam Abbott, Rachel Christie, Fergus Cumming, Julie Day, Owen Jones, Rob Paton, Charlie Turner, Thomas Ward

    Published in PLoS Computational Biology (2023-09-01)
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  9. 9

    Inference of the SARS-CoV-2 generation time using UK household data by William S Hart, Sam Abbott, Akira Endo, Joel Hellewell, Elizabeth Miller, Nick Andrews, Philip K Maini, Sebastian Funk, Robin N Thompson

    Published in eLife (2022-02-01)
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  10. 10

    Adoption and impact of non-pharmaceutical interventions for COVID-19 [version 1; peer review: 1 approved, 2 approved with reservations] by Natsuko Imai, Katy A.M. Gaythorpe, Sam Abbott, Sangeeta Bhatia, Sabine van Elsland, Kiesha Prem, Yang Liu, Neil M. Ferguson

    Published in Wellcome Open Research (2020-04-01)
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  11. 11

    Correction: The importance of investing in data, models, experiments, team science, and public trust to help policymakers prepare for the next pandemic. by Richard Grieve, Youqi Yang, Sam Abbott, Giridhara R Babu, Malay Bhattacharyya, Natalie Dean, Stephen Evans, Nicholas Jewell, Sinéad M Langan, Woojoo Lee, Geert Molenberghs, Liam Smeeth, Elizabeth Williamson, Bhramar Mukherjee

    Published in PLOS Global Public Health (2024-01-01)
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  12. 12

    The importance of investing in data, models, experiments, team science, and public trust to help policymakers prepare for the next pandemic. by Richard Grieve, Youqi Yang, Sam Abbott, Giridhara R Babu, Malay Bhattacharyya, Natalie Dean, Stephen Evans, Nicholas Jewell, Sinéad M Langan, Woojoo Lee, Geert Molenberghs, Liam Smeeth, Elizabeth Williamson, Bhramar Mukherjee

    Published in PLOS Global Public Health (2023-01-01)
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  13. 13

    Comparing human and model-based forecasts of COVID-19 in Germany and Poland. by Nikos I Bosse, Sam Abbott, Johannes Bracher, Habakuk Hain, Billy J Quilty, Mark Jit, Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group, Edwin van Leeuwen, Anne Cori, Sebastian Funk

    Published in PLoS Computational Biology (2022-09-01)
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  14. 14

    Association between mobility, non-pharmaceutical interventions, and COVID-19 transmission in Ghana: A modelling study using mobile phone data by Hamish Gibbs, Yang Liu, Sam Abbott, Isaac Baffoe-Nyarko, Dennis O. Laryea, Ernest Akyereko, Patrick Kuma-Aboagye, Ivy Asantewaa Asante, Oriol Mitjà, William Ampofo, Franklin Asiedu-Bekoe, Michael Marks, Rosalind M. Eggo

    Published in PLOS Global Public Health (2022-01-01)
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  15. 15

    Early analysis of the Australian COVID-19 epidemic by David J Price, Freya M Shearer, Michael T Meehan, Emma McBryde, Robert Moss, Nick Golding, Eamon J Conway, Peter Dawson, Deborah Cromer, James Wood, Sam Abbott, Jodie McVernon, James M McCaw

    Published in eLife (2020-08-01)
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  16. 16

    Best practices for estimating and reporting epidemiological delay distributions of infectious diseases. by Kelly Charniga, Sang Woo Park, Andrei R Akhmetzhanov, Anne Cori, Jonathan Dushoff, Sebastian Funk, Katelyn M Gostic, Natalie M Linton, Adrian Lison, Christopher E Overton, Juliet R C Pulliam, Thomas Ward, Simon Cauchemez, Sam Abbott

    Published in PLoS Computational Biology (2024-10-01)
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  17. 17

    Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany. by Elisabeth K Brockhaus, Daniel Wolffram, Tanja Stadler, Michael Osthege, Tanmay Mitra, Jonas M Littek, Ekaterina Krymova, Anna J Klesen, Jana S Huisman, Stefan Heyder, Laura M Helleckes, Matthias An der Heiden, Sebastian Funk, Sam Abbott, Johannes Bracher

    Published in PLoS Computational Biology (2023-11-01)
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  18. 18

    Collaborative nowcasting of COVID-19 hospitalization incidences in Germany. by Daniel Wolffram, Sam Abbott, Matthias An der Heiden, Sebastian Funk, Felix Günther, Davide Hailer, Stefan Heyder, Thomas Hotz, Jan van de Kassteele, Helmut Küchenhoff, Sören Müller-Hansen, Diellë Syliqi, Alexander Ullrich, Maximilian Weigert, Melanie Schienle, Johannes Bracher

    Published in PLoS Computational Biology (2023-08-01)
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  19. 19

    Association between mobility, non-pharmaceutical interventions, and COVID-19 transmission in Ghana: A modelling study using mobile phone data. by Hamish Gibbs, Yang Liu, Sam Abbott, Isaac Baffoe-Nyarko, Dennis O Laryea, Ernest Akyereko, Patrick Kuma-Aboagye, Ivy Asantewaa Asante, Oriol Mitjà, LSHTM CMMID COVID-19 Working Group, William Ampofo, Franklin Asiedu-Bekoe, Michael Marks, Rosalind M Eggo

    Published in PLOS Global Public Health (2022-01-01)
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  20. 20

    Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis by Paul Mee, Neal Alexander, Philippe Mayaud, Felipe de Jesus Colón González, Sam Abbott, Andreza Aruska de Souza Santos, André Luís Acosta, Kris V. Parag, Rafael H.M. Pereira, Carlos A. Prete, Jr, Ester C. Sabino, Nuno R. Faria, Oliver J Brady

    Published in The Lancet Regional Health. Americas (2022-01-01)
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