Search Results - Sameer Velankar

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  1. 1

    Whither structural biologists? by Gerard J. Kleywegt, Sameer Velankar

    Published in IUCrJ (2022-07-01)
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  2. 2

    Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data by Preeti Choudhary, Stephen Anyango, John Berrisford, James Tolchard, Mihaly Varadi, Sameer Velankar

    Published in Scientific Data (2023-04-01)
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  3. 3

    BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. by David Sehnal, Sebastian Bittrich, Sameer Velankar, Jaroslav Koča, Radka Svobodová, Stephen K Burley, Alexander S Rose

    Published in PLoS Computational Biology (2020-10-01)
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  4. 4

    Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature by Melanie Vollmar, Santosh Tirunagari, Deborah Harrus, David Armstrong, Romana Gáborová, Deepti Gupta, Marcelo Querino Lima Afonso, Genevieve Evans, Sameer Velankar

    Published in Scientific Data (2024-09-01)
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  5. 5

    PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank by Ibrahim Roshan Kunnakkattu, Preeti Choudhary, Lukas Pravda, Nurul Nadzirin, Oliver S. Smart, Qi Yuan, Stephen Anyango, Sreenath Nair, Mihaly Varadi, Sameer Velankar

    Published in Journal of Cheminformatics (2023-12-01)
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  6. 6

    Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies by Joseph I. J. Ellaway, Stephen Anyango, Sreenath Nair, Hossam A. Zaki, Nurul Nadzirin, Harold R. Powell, Aleksandras Gutmanas, Mihaly Varadi, Sameer Velankar

    Published in Structural Dynamics (2024-05-01)
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  7. 7

    Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data by Sri Devan Appasamy, John Berrisford, Romana Gaborova, Sreenath Nair, Stephen Anyango, Sergei Grudinin, Mandar Deshpande, David Armstrong, Ivanna Pidruchna, Joseph I. J. Ellaway, Grisell Díaz Leines, Deepti Gupta, Deborah Harrus, Mihaly Varadi, Sameer Velankar

    Published in Scientific Data (2023-12-01)
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  8. 8

    A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community) [version 1; peer review: 1 approved, 3 approved with reservations] by Christine Orengo, Sameer Velankar, Shoshana Wodak, Vincent Zoete, Alexandre M.J.J. Bonvin, Arne Elofsson, K. Anton Feenstra, Dietland L. Gerloff, Thomas Hamelryck, John M. Hancock, Manuela Helmer-Citterich, Adam Hospital, Modesto Orozco, Anastassis Perrakis, Matthias Rarey, Claudio Soares, Joel L. Sussman, Janet M. Thornton, Pierre Tuffery, Gabor Tusnady, Rikkert Wierenga, Tiina Salminen, Bohdan Schneider

    Published in F1000Research (2020-04-01)
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  9. 9

    West-Life: A Virtual Research Environment for structural biology by Chris Morris, Paolo Andreetto, Lucia Banci, Alexandre M.J.J. Bonvin, Grzegorz Chojnowski, Laura del Cano, José Marıa Carazo, Pablo Conesa, Susan Daenke, George Damaskos, Andrea Giachetti, Natalie E.C. Haley, Maarten L. Hekkelman, Philipp Heuser, Robbie P. Joosten, Daniel Kouřil, Aleš Křenek, Tomáš Kulhánek, Victor S. Lamzin, Nurul Nadzirin, Anastassis Perrakis, Antonio Rosato, Fiona Sanderson, Joan Segura, Joerg Schaarschmidt, Egor Sobolev, Sergio Traldi, Mikael E. Trellet, Sameer Velankar, Marco Verlato, Martyn Winn

    Published in Journal of Structural Biology: X (2019-01-01)
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  10. 10

    Community recommendations on cryoEM data archiving and validation by Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R. Baldwin, John M. Berrisford, Gérard Bricogne, Preeti Choudhary, Tristan I. Croll, Radostin Danev, Sai J. Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J. Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman Salih, Sjors H. W. Scheres, Gunnar F. Schroeder, Carlos Oscar S. Sorzano, Scott M. Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar

    Published in IUCrJ (2024-03-01)
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