Search Results - Samuel Chaffron

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  1. 1

    Community metabolic modeling of host-microbiota interactions through multi-objective optimization by Anna Lambert, Marko Budinich, Maxime Mahé, Samuel Chaffron, Damien Eveillard

    Published in iScience (2024-06-01)
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  2. 2

    MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics by Benjamin Churcheward, Maxime Millet, Audrey Bihouée, Guillaume Fertin, Samuel Chaffron

    Published in mSystems (2022-08-01)
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  3. 3

    Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities by Nils Giordano, Marinna Gaudin, Camille Trottier, Erwan Delage, Charlotte Nef, Chris Bowler, Samuel Chaffron

    Published in Nature Communications (2024-03-01)
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  4. 4

    Quantitative Assessment of Nucleocytoplasmic Large DNA Virus and Host Interactions Predicted by Co-occurrence Analyses by Lingjie Meng, Hisashi Endo, Romain Blanc-Mathieu, Samuel Chaffron, Rodrigo Hernández-Velázquez, Hiroto Kaneko, Hiroyuki Ogata

    Published in mSphere (2021-04-01)
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  5. 5

    Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula by Yajuan Lin, Carly Moreno, Adrian Marchetti, Hugh Ducklow, Oscar Schofield, Erwan Delage, Michael Meredith, Zuchuan Li, Damien Eveillard, Samuel Chaffron, Nicolas Cassar

    Published in Nature Communications (2021-08-01)
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  6. 6

    First Viruses Infecting the Marine Diatom Guinardia delicatula by Laure Arsenieff, Nathalie Simon, Fabienne Rigaut-Jalabert, Florence Le Gall, Samuel Chaffron, Erwan Corre, Emmanuelle Com, Emmanuelle Com, Estelle Bigeard, Anne-Claire Baudoux

    Published in Frontiers in Microbiology (2019-01-01)
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  7. 7

    Disentangling temporal associations in marine microbial networks by Ina Maria Deutschmann, Anders K. Krabberød, Francisco Latorre, Erwan Delage, Cèlia Marrasé, Vanessa Balagué, Josep M. Gasol, Ramon Massana, Damien Eveillard, Samuel Chaffron, Ramiro Logares

    Published in Microbiome (2023-04-01)
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  8. 8

    Genomic adaptation of giant viruses in polar oceans by Lingjie Meng, Tom O. Delmont, Morgan Gaïa, Eric Pelletier, Antonio Fernàndez-Guerra, Samuel Chaffron, Russell Y. Neches, Junyi Wu, Hiroto Kaneko, Hisashi Endo, Hiroyuki Ogata

    Published in Nature Communications (2023-10-01)
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  9. 9

    Maternal prebiotic supplementation impacts colitis development in offspring mice by Amélie Lê, Amandine Selle, Philippe Aubert, Tony Durand, Carole Brosseau, Philippe Bordron, Erwan Delage, Samuel Chaffron, Camille Petitfils, Nicolas Cenac, Michel Neunlist, Marie Bodinier, Malvyne Rolli-Derkinderen

    Published in Frontiers in Nutrition (2023-01-01)
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  10. 10

    Could the Microbiota Be a Predictive Factor for the Clinical Response to Probiotic Supplementation in IBS-D? A Cohort Study by Justine Marchix, Lucille Quénéhervé, Philippe Bordron, Philippe Aubert, Tony Durand, Thibauld Oullier, Claude Blondeau, Samira Ait Abdellah, Stanislas Bruley des Varannes, Samuel Chaffron, Emmanuel Coron, Michel Neunlist

    Published in Microorganisms (2023-01-01)
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  11. 11

    Faeces‐derived extracellular vesicles participate in the onset of barrier dysfunction leading to liver diseases by Lionel Fizanne, Alexandre Villard, Nadia Benabbou, Sylvain Recoquillon, Raffaella Soleti, Erwan Delage, Mireille Wertheimer, Xavier Vidal‐Gómez, Thibauld Oullier, Samuel Chaffron, M. Carmen Martínez, Michel Neunlist, Jérôme Boursier, Ramaroson Andriantsitohaina

    Published in Journal of Extracellular Vesicles (2023-02-01)
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  12. 12

    Non-cyanobacterial diazotrophs support the survival of marine microalgae in nitrogen-depleted environment by Udita Chandola, Marinna Gaudin, Camille Trottier, Louis-Josselin Lavier-Aydat, Eric Manirakiza, Samuel Menicot, Erik Jörg Fischer, Isabelle Louvet, Thomas Lacour, Timothée Chaumier, Atsuko Tanaka, Georg Pohnert, Samuel Chaffron, Leïla Tirichine

    Published in Genome Biology (2025-05-01)
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  13. 13

    Disentangling microbial networks across pelagic zones in the tropical and subtropical global ocean by Ina M. Deutschmann, Erwan Delage, Caterina R. Giner, Marta Sebastián, Julie Poulain, Javier Arístegui, Carlos M. Duarte, Silvia G. Acinas, Ramon Massana, Josep M. Gasol, Damien Eveillard, Samuel Chaffron, Ramiro Logares

    Published in Nature Communications (2024-01-01)
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  14. 14

    The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea. by Kathrin Endt, Bärbel Stecher, Samuel Chaffron, Emma Slack, Nicolas Tchitchek, Arndt Benecke, Laurye Van Maele, Jean-Claude Sirard, Andreas J Mueller, Mathias Heikenwalder, Andrew J Macpherson, Richard Strugnell, Christian von Mering, Wolf-Dietrich Hardt

    Published in PLoS Pathogens (2010-09-01)
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  15. 15

    Patterns and drivers of diatom diversity and abundance in the global ocean by Juan J. Pierella Karlusich, Karen Cosnier, Lucie Zinger, Nicolas Henry, Charlotte Nef, Guillaume Bernard, Eleonora Scalco, Etienne Dvorak, Tara Oceans Coordinators, Fabio Rocha Jimenez Vieira, Erwan Delage, Samuel Chaffron, Sergey Ovchinnikov, Adriana Zingone, Chris Bowler

    Published in Nature Communications (2025-04-01)
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  16. 16

    Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System by Jacques Gonzales, Justine Marchix, Laetitia Aymeric, Catherine Le Berre-Scoul, Johanna Zoppi, Philippe Bordron, Marie Burel, Laetitia Davidovic, Jean-Romain Richard, Alexandru Gaman, Florian Lejuste, Julie Z. Brouillet, Françoise Le Vacon, Samuel Chaffron, Marion Leboyer, Hélène Boudin, Michel Neunlist

    Published in Microorganisms (2021-08-01)
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  17. 17

    Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean by Hiroto Kaneko, Romain Blanc-Mathieu, Hisashi Endo, Samuel Chaffron, Tom O. Delmont, Morgan Gaia, Nicolas Henry, Rodrigo Hernández-Velázquez, Canh Hao Nguyen, Hiroshi Mamitsuka, Patrick Forterre, Olivier Jaillon, Colomban de Vargas, Matthew B. Sullivan, Curtis A. Suttle, Lionel Guidi, Hiroyuki Ogata

    Published in iScience (2021-01-01)
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  18. 18

    Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems by Antonietta Capotondi, Antonietta Capotondi, Michael Jacox, Michael Jacox, Michael Jacox, Chris Bowler, Chris Bowler, Maria Kavanaugh, Patrick Lehodey, Daniel Barrie, Stephanie Brodie, Stephanie Brodie, Samuel Chaffron, Samuel Chaffron, Wei Cheng, Wei Cheng, Daniela F. Dias, Damien Eveillard, Damien Eveillard, Lionel Guidi, Lionel Guidi, Daniele Iudicone, Nicole S. Lovenduski, Janet A. Nye, Ivonne Ortiz, Douglas Pirhalla, Mercedes Pozo Buil, Mercedes Pozo Buil, Vincent Saba, Scott Sheridan, Samantha Siedlecki, Aneesh Subramanian, Colomban de Vargas, Colomban de Vargas, Emanuele Di Lorenzo, Scott C. Doney, Albert J. Hermann, Albert J. Hermann, Terrence Joyce, Mark Merrifield, Arthur J. Miller, Fabrice Not, Fabrice Not, Stephane Pesant

    Published in Frontiers in Marine Science (2019-10-01)
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