Search Results - Terence P. Speed

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  1. 1

    Establishing the Link between X-Chromosome Aberrations and <i>TP53</i> Status, with Breast Cancer Patient Outcomes by Franco Caramia, Terence P. Speed, Hui Shen, Ygal Haupt, Sue Haupt

    Published in Cells (2023-09-01)
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  2. 2

    Genome-wide analysis of glucocorticoid receptor binding regions in adipocytes reveal gene network involved in triglyceride homeostasis. by Chi-Yi Yu, Oleg Mayba, Joyce V Lee, Joanna Tran, Charlie Harris, Terence P Speed, Jen-Chywan Wang

    Published in PLoS ONE (2010-12-01)
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  3. 3

    scClassify: sample size estimation and multiscale classification of cells using single and multiple reference by Yingxin Lin, Yue Cao, Hani Jieun Kim, Agus Salim, Terence P Speed, David M Lin, Pengyi Yang, Jean Yee Hwa Yang

    Published in Molecular Systems Biology (2020-06-01)
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  4. 4

    Identification of candidate growth promoting genes in ovarian cancer through integrated copy number and expression analysis. by Manasa Ramakrishna, Louise H Williams, Samantha E Boyle, Jennifer L Bearfoot, Anita Sridhar, Terence P Speed, Kylie L Gorringe, Ian G Campbell

    Published in PLoS ONE (2010-01-01)
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  5. 5

    Peripheral immune cell abundance differences link blood mitochondrial DNA copy number and Parkinson’s disease by Longfei Wang, Jiru Han, Liam G. Fearnley, Michael Milton, Haloom Rafehi, Joshua Reid, Zachary F. Gerring, Shashank Masaldan, Tali Lang, Terence P. Speed, Melanie Bahlo

    Published in npj Parkinson's Disease (2024-11-01)
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  6. 6

    An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences by Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T. Byrne, Robert H. Vonderheide, Adam A. Margolin, Motomi Mori, Paul T. Spellman, Lisa M. Coussens, Terence P. Speed

    Published in BMC Genomics (2023-06-01)
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  7. 7

    Sir2 paralogues cooperate to regulate virulence genes and antigenic variation in Plasmodium falciparum. by Christopher J Tonkin, Céline K Carret, Manoj T Duraisingh, Till S Voss, Stuart A Ralph, Mirja Hommel, Michael F Duffy, Liliana Mancio da Silva, Artur Scherf, Alasdair Ivens, Terence P Speed, James G Beeson, Alan F Cowman

    Published in PLoS Biology (2009-04-01)
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  8. 8

    Drug and cell type-specific regulation of genes with different classes of estrogen receptor beta-selective agonists. by Sreenivasan Paruthiyil, Aleksandra Cvoro, Xiaoyue Zhao, Zhijin Wu, Yunxia Sui, Richard E Staub, Scott Baggett, Candice B Herber, Chandi Griffin, Mary Tagliaferri, Heather A Harris, Isaac Cohen, Leonard F Bjeldanes, Terence P Speed, Fred Schaufele, Dale C Leitman

    Published in PLoS ONE (2009-07-01)
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  9. 9

    Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments by Yuzhou Feng, Tianpei Yang, John Zhu, Mabel Li, Maria Doyle, Volkan Ozcoban, Greg T. Bass, Angela Pizzolla, Lachlan Cain, Sirui Weng, Anupama Pasam, Nikolce Kocovski, Yu-Kuan Huang, Simon P. Keam, Terence P. Speed, Paul J. Neeson, Richard B. Pearson, Shahneen Sandhu, David L. Goode, Anna S. Trigos

    Published in Nature Communications (2023-05-01)
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  10. 10

    The Subclonal Architecture of Metastatic Breast Cancer: Results from a Prospective Community-Based Rapid Autopsy Program "CASCADE". by Peter Savas, Zhi Ling Teo, Christophe Lefevre, Christoffer Flensburg, Franco Caramia, Kathryn Alsop, Mariam Mansour, Prudence A Francis, Heather A Thorne, Maria Joao Silva, Nnennaya Kanu, Michelle Dietzen, Andrew Rowan, Maik Kschischo, Stephen Fox, David D Bowtell, Sarah-Jane Dawson, Terence P Speed, Charles Swanton, Sherene Loi

    Published in PLoS Medicine (2016-12-01)
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  11. 11

    Correction: The Subclonal Architecture of Metastatic Breast Cancer: Results from a Prospective Community-Based Rapid Autopsy Program "CASCADE". by Peter Savas, Zhi Ling Teo, Christophe Lefevre, Christoffer Flensburg, Franco Caramia, Kathryn Alsop, Mariam Mansour, Prudence A Francis, Heather A Thorne, Maria Joao Silva, Nnennaya Kanu, Michelle Dietzen, Andrew Rowan, Maik Kschischo, Stephen Fox, David D Bowtell, Sarah-Jane Dawson, Terence P Speed, Charles Swanton, Sherene Loi

    Published in PLoS Medicine (2017-04-01)
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  12. 12

    Stem cell plasticity, acetylation of H3K14, and de novo gene activation rely on KAT7 by Andrew J. Kueh, Maria I. Bergamasco, Anna Quaglieri, Belinda Phipson, Connie S.N. Li-Wai-Suen, Ingrid M. Lönnstedt, Yifang Hu, Zhi-Ping Feng, Chris Woodruff, Rose E. May, Stephen Wilcox, Alexandra L. Garnham, Michael P. Snyder, Gordon K. Smyth, Terence P. Speed, Tim Thomas, Anne K. Voss

    Published in Cell Reports (2023-01-01)
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  13. 13

    Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex. by Katherine Belov, Janine E Deakin, Anthony T Papenfuss, Michelle L Baker, Sandra D Melman, Hannah V Siddle, Nicolas Gouin, David L Goode, Tobias J Sargeant, Mark D Robinson, Matthew J Wakefield, Shaun Mahony, Joseph G R Cross, Panayiotis V Benos, Paul B Samollow, Terence P Speed, Jennifer A Marshall Graves, Robert D Miller

    Published in PLoS Biology (2006-03-01)
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  14. 14

    Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. by Xiao-yong Li, Stewart MacArthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Luengo Hendriks, Hou Cheng Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin

    Published in PLoS Biology (2008-02-01)
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