Search Results - Yan W Asmann

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  1. 1

    Assessment and Optimization of Explainable Machine Learning Models Applied to Transcriptomic Data by Yongbing Zhao, Jinfeng Shao, Yan W. Asmann

    Published in Genomics, Proteomics & Bioinformatics (2022-10-01)
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  2. 2

    Network approaches for omics studies of neurodegenerative diseases by Na Zhao, Zachary Quicksall, Yan W. Asmann, Yingxue Ren

    Published in Frontiers in Genetics (2022-09-01)
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  3. 3

    Expression of Polarity Genes in Human Cancer by Wan-Hsin Lin, Yan W. Asmann, Panos Z. Anastasiadis

    Published in Cancer Informatics (2015-03-01)
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  4. 4

    Impact of spaceflight on gene expression in cultured human mesenchymal stem/stromal cells. by Peng Huang, Bryan T Piatkowski, Yesesri Cherukuri, Yan W Asmann, Abba C Zubair

    Published in PLoS ONE (2025-01-01)
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  5. 5

    Circulating Extracellular RNA Markers of Liver Regeneration. by Irene K Yan, Xue Wang, Yan W Asmann, Hiroaki Haga, Tushar Patel

    Published in PLoS ONE (2016-01-01)
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  6. 6

    Inflation of tumor mutation burden by tumor-only sequencing in under-represented groups by Yan W. Asmann, Kaushal Parikh, P. Leif Bergsagel, Haidong Dong, Alex A. Adjei, Mitesh J. Borad, Aaron S. Mansfield

    Published in npj Precision Oncology (2021-03-01)
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  7. 7

    Gene transcription changes in asthmatic chronic rhinosinusitis with nasal polyps and comparison to those in atopic dermatitis. by Douglas A Plager, Jane C Kahl, Yan W Asmann, Allan E Nilson, John F Pallanch, Oren Friedman, Hirohito Kita

    Published in PLoS ONE (2010-07-01)
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  8. 8

    Comprehensive profiling of cancer neoantigens from aberrant RNA splicing by Yi Lin, Yan W Asmann, Barath Shreeder, Keith L Knutson, Erik Jessen, Daniel P Wickland, Colton McNinch, Brian Necela

    Published in Journal for ImmunoTherapy of Cancer (2024-05-01)
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  9. 9

    Deconvolution reveals cell-type-specific transcriptomic changes in the aging mouse brain by Yingxue Ren, Xue Wang, Shuwen Zhang, Hongru Hu, Zachary Quicksall, Sangderk Lee, Josh M. Morganti, Lance A. Johnson, Yan W. Asmann, Na Zhao

    Published in Scientific Reports (2023-10-01)
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  10. 10

    TMEM106B haplotypes have distinct gene expression patterns in aged brain by Yingxue Ren, Marka van Blitterswijk, Mariet Allen, Minerva M. Carrasquillo, Joseph S. Reddy, Xue Wang, Thomas G. Beach, Dennis W. Dickson, Nilüfer Ertekin-Taner, Yan W. Asmann, Rosa Rademakers

    Published in Molecular Neurodegeneration (2018-07-01)
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  11. 11

    HLA class-I and class-II restricted neoantigen loads predict overall survival in breast cancer by Yingxue Ren, Yesesri Cherukuri, Daniel P. Wickland, Vivekananda Sarangi, Shulan Tian, Jodi M. Carter, Aaron S. Mansfield, Matthew S. Block, Mark E. Sherman, Keith L. Knutson, Yi Lin, Yan W. Asmann

    Published in OncoImmunology (2020-01-01)
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  12. 12

    Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol. by Zhifu Sun, Yan W Asmann, Asha Nair, Yuji Zhang, Liguo Wang, Krishna R Kalari, Aditya V Bhagwate, Tiffany R Baker, Jennifer M Carr, Jean-Pierre A Kocher, Edith A Perez, E Aubrey Thompson

    Published in PLoS ONE (2013-01-01)
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  13. 13

    APOE deficiency impacts neural differentiation and cholesterol biosynthesis in human iPSC-derived cerebral organoids by Jing Zhao, Tadafumi C. Ikezu, Wenyan Lu, Jesse R. Macyczko, Yonghe Li, Laura J. Lewis-Tuffin, Yuka A. Martens, Yingxue Ren, Yiyang Zhu, Yan W. Asmann, Nilüfer Ertekin-Taner, Takahisa Kanekiyo, Guojun Bu

    Published in Stem Cell Research & Therapy (2023-08-01)
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  14. 14

    Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines. by Liang Wang, Ann L Oberg, Yan W Asmann, Hugues Sicotte, Shannon K McDonnell, Shaun M Riska, Wanguo Liu, Clifford J Steer, Subbaya Subramanian, Julie M Cunningham, James R Cerhan, Stephen N Thibodeau

    Published in PLoS ONE (2009-06-01)
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  15. 15

    Disparity in the detection of chromosome 15 centromere in patients of African ancestry with a plasma cell neoplasm by Alaa Koleilat, Hongwei Tang, Neeraj Sharma, Huihuang Yan, Shulan Tian, James Smadbeck, Suganti Shivaram, Reid Meyer, Kathryn Pearce, Michael Baird, Cinthya J. Zepeda-Mendoza, Xinjie Xu, Patricia T. Greipp, Jess F. Peterson, Rhett P. Ketterling, P. Leif Bergsagel, Celine Vachon, S. Vincent Rajkumar, Shaji Kumar, Yan W. Asmann, Eran Elhaik, Linda B. Baughn

    Published in Genetics in Medicine Open (2023-01-01)
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  16. 16

    LRP1 in vascular mural cells modulates cerebrovascular integrity and function in the presence of APOE4 by Hiroshi Oue, Yu Yamazaki, Wenhui Qiao, Chen Yuanxin, Yingxue Ren, Aishe Kurti, Francis Shue, Tammee M. Parsons, Ralph B. Perkerson, Keiji Kawatani, Ni Wang, Skylar C. Starling, Bhaskar Roy, Ioana-Emilia Mosneag, Tomonori Aikawa, Marie-Louise Holm, Chia-Chen Liu, Yasuteru Inoue, Patrick M. Sullivan, Yan W. Asmann, Betty Y.S. Kim, Guojun Bu, Takahisa Kanekiyo

    Published in JCI Insight (2023-04-01)
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  17. 17

    Transcriptomic classification of diffuse large B-cell lymphoma identifies a high-risk activated B-cell-like subpopulation with targetable MYC dysregulation by Matthew E. Stokes, Kerstin Wenzl, C. Chris Huang, María Ortiz, Chih-Chao Hsu, Matthew J. Maurer, Nicholas Stong, Yumi Nakayama, Lei Wu, Hsiling Chiu, Ann Polonskaia, Samuel A. Danziger, Fadi Towfic, Joel Parker, Rebecca L. King, Brian K. Link, Susan L. Slager, Vivekananda Sarangi, Yan W. Asmann, Joseph P. Novak, Akshay Sudhindra, Stephen M. Ansell, Thomas M. Habermann, Patrick R. Hagner, Grzegorz S. Nowakowski, James R. Cerhan, Anne J. Novak, Anita K. Gandhi

    Published in Nature Communications (2024-08-01)
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