Search Results - Yu Shyr

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  1. 1

    Pan-Cancer Analysis Reveals Common and Specific Relationships between Intragenic miRNAs and Their Host Genes by Baohong Liu, Yu Shyr, Qi Liu

    Published in Biomedicines (2021-09-01)
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  2. 2

    aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph by Jia Li, Yu Shyr, Qi Liu

    Published in Genome Biology (2024-08-01)
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  3. 3

    Benchmarking single-cell tumor immune atlases and application for uncovering cell states related to immunotherapy response by Jing Yang, Yu Shyr, Qi Liu

    Published in Genome Biology (2026-03-01)
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  4. 4

    Power and sample sizes estimation in clinical trials with treatment switching in intention-to-treat analysis: a simulation study by Lejun Deng, Chih-Yuan Hsu, Yu Shyr

    Published in BMC Medical Research Methodology (2023-02-01)
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  5. 5

    Power and sample size calculation for non-inferiority trials with treatment switching in intention-to-treat analysis comparing RMSTs by Austin Shih, Chih-Yuan Hsu, Yu Shyr

    Published in BMC Medical Research Methodology (2025-06-01)
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  6. 6

    FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing. by Hua-Chang Chen, Jing Wang, Yu Shyr, Qi Liu

    Published in PLoS Computational Biology (2024-01-01)
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  7. 7

    The Utilization of Formalin Fixed-Paraffin-Embedded Specimens in High Throughput Genomic Studies by Pan Zhang, Brian D. Lehmann, Yu Shyr, Yan Guo

    Published in International Journal of Genomics (2017-01-01)
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  8. 8

    VICTOR: Validation and inspection of cell type annotation through optimal regression by Chia-Jung Chang, Chih-Yuan Hsu, Qi Liu, Yu Shyr

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  9. 9

    The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data by Yan Guo, Shilin Zhao, Quanhu Sheng, David C Samuels, Yu Shyr

    Published in BMC Genomics (2017-10-01)
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  10. 10

    RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment by Yan Guo, Shilin Zhao, Chung-I Li, Quanhu Sheng, Yu Shyr

    Published in Cancer Informatics (2014-01-01)
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  11. 11

    RnaSeqSampleSize: real data based sample size estimation for RNA sequencing by Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

    Published in BMC Bioinformatics (2018-05-01)
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  12. 12

    Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument. by Chengjian Tu, Jun Li, Shichen Shen, Quanhu Sheng, Yu Shyr, Jun Qu

    Published in PLoS ONE (2016-01-01)
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  13. 13

    Evaluation of Allele Frequency Estimation Using Pooled Sequencing Data Simulation by Yan Guo, David C. Samuels, Jiang Li, Travis Clark, Chung-I Li, Yu Shyr

    Published in The Scientific World Journal (2013-01-01)
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  14. 14

    Characterization of the MDSC proteome associated with metastatic murine mammary tumors using label-free mass spectrometry and shotgun proteomics. by Angela M Boutté, W Hayes McDonald, Yu Shyr, Li Yang, P Charles Lin

    Published in PLoS ONE (2011-01-01)
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  15. 15

    Local breast cancer spatial patterning: a tool for community health resource allocation to address local disparities in breast cancer mortality. by Dana M Brantley-Sieders, Kang-Hsien Fan, Sandra L Deming-Halverson, Yu Shyr, Rebecca S Cook

    Published in PLoS ONE (2012-01-01)
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  16. 16

    scDemultiplex: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos by Li-Ching Huang, Lindsey K. Stolze, Hua-Chang Chen, Alexander Gelbard, Yu Shyr, Qi Liu, Quanhu Sheng

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  17. 17

    Eph/ephrin profiling in human breast cancer reveals significant associations between expression level and clinical outcome. by Dana M Brantley-Sieders, Aixiang Jiang, Krishna Sarma, Akosua Badu-Nkansah, Debra L Walter, Yu Shyr, Jin Chen

    Published in PLoS ONE (2011-01-01)
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  18. 18

    TNBCtype: A Subtyping Tool for Triple-Negative Breast Cancer by Xi Chen, Joshua A. Bauer, Brian D. Lehmann, William H. Gray, Jiang Li, Yu Shyr, Jennifer A. Pietenpol

    Published in Cancer Informatics (2012-07-01)
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  19. 19

    MetaGSCA: A tool for meta-analysis of gene set differential coexpression. by Yan Guo, Hui Yu, Haocan Song, Jiapeng He, Olufunmilola Oyebamiji, Huining Kang, Jie Ping, Scott Ness, Yu Shyr, Fei Ye

    Published in PLoS Computational Biology (2021-05-01)
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  20. 20

    A data similarity-based strategy for meta-analysis of transcriptional profiles in cancer. by Qingchao Qiu, Pengcheng Lu, Yuzhu Xiang, Yu Shyr, Xi Chen, Brian David Lehmann, Daniel Joseph Viox, Alfred L George, Yajun Yi

    Published in PLoS ONE (2013-01-01)
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