An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis Profile

A better understanding of the response against Tuberculosis (TB) infection is required to accurately identify the individuals with an active or a latent TB infection (LTBI) and also those LTBI patients at higher risk of developing active TB. In this work, we have used the information obtained from s...

詳細記述

書誌詳細
出版年:Frontiers in Immunology
主要な著者: Olivia Estévez, Luis Anibarro, Elina Garet, Ángeles Pallares, Laura Barcia, Laura Calviño, Cremildo Maueia, Tufária Mussá, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato, Hugo López-Fernández, Nuno A. Fonseca, Rajko Reljic, África González-Fernández
フォーマット: 論文
言語:英語
出版事項: Frontiers Media S.A. 2020-07-01
主題:
オンライン・アクセス:https://www.frontiersin.org/article/10.3389/fimmu.2020.01470/full
その他の書誌記述
要約:A better understanding of the response against Tuberculosis (TB) infection is required to accurately identify the individuals with an active or a latent TB infection (LTBI) and also those LTBI patients at higher risk of developing active TB. In this work, we have used the information obtained from studying the gene expression profile of active TB patients and their infected –LTBI- or uninfected –NoTBI- contacts, recruited in Spain and Mozambique, to build a class-prediction model that identifies individuals with a TB infection profile. Following this approach, we have identified several genes and metabolic pathways that provide important information of the immune mechanisms triggered against TB infection. As a novelty of our work, a combination of this class-prediction model and the direct measurement of different immunological parameters, was used to identify a subset of LTBI contacts (called TB-like) whose transcriptional and immunological profiles are suggestive of infection with a higher probability of developing active TB. Validation of this novel approach to identifying LTBI individuals with the highest risk of active TB disease merits further longitudinal studies on larger cohorts in TB endemic areas.
ISSN:1664-3224