Virulence-related regulatory network of Pseudomonas syringae

Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately...

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Published in:Computational and Structural Biotechnology Journal
Main Authors: Jiadai Huang, Chunyan Yao, Yue Sun, Quanjiang Ji, Xin Deng
Format: Article
Language:English
Published: Elsevier 2022-01-01
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S2001037022005050
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author Jiadai Huang
Chunyan Yao
Yue Sun
Quanjiang Ji
Xin Deng
author_facet Jiadai Huang
Chunyan Yao
Yue Sun
Quanjiang Ji
Xin Deng
author_sort Jiadai Huang
collection DOAJ
container_title Computational and Structural Biotechnology Journal
description Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately 50 of which are responsible for virulence-related gene and pathway regulation. Over the past decades, RNA sequencing, chromatin immunoprecipitation sequencing, high-throughput systematic evolution of ligands by exponential enrichment, and other technologies have been applied to identify the functions of master regulators and their interactions in virulence-related pathways. This review summarises the recent advances in the regulatory networks of TFs involved in the type III secretion system (T3SS) and non-T3SS virulence-associated pathways, including motility, biofilm formation, quorum sensing, nucleotide-based secondary messengers, phytotoxins, siderophore production, and oxidative stress. Moreover, this review discusses the future perspectives in terms of TF-mediated pathogenesis mechanisms and provides novel insights that will help combat P. syringae infections based on the regulatory networks of TFs.
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spelling doaj-art-2157dff1b8144d5dabaed3f73fb3fcff2025-08-19T21:43:25ZengElsevierComputational and Structural Biotechnology Journal2001-03702022-01-01206259627010.1016/j.csbj.2022.11.011Virulence-related regulatory network of Pseudomonas syringaeJiadai Huang0Chunyan Yao1Yue Sun2Quanjiang Ji3Xin Deng4Department of Biomedical Sciences, City University of Hong Kong, Kowloon Tong, Hong Kong SAR 999077 ChinaDepartment of Biomedical Sciences, City University of Hong Kong, Kowloon Tong, Hong Kong SAR 999077 ChinaDepartment of Biomedical Sciences, City University of Hong Kong, Kowloon Tong, Hong Kong SAR 999077 ChinaGene Editing Center, School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, ChinaDepartment of Biomedical Sciences, City University of Hong Kong, Kowloon Tong, Hong Kong SAR 999077 China; Shenzhen Research Institute, City University of Hong Kong, Shenzhen 518057, China; Corresponding author at: Shenzhen Research Institute, City University of Hong Kong, Shenzhen 518057, China.Transcription factors (TFs) play important roles in regulating multiple biological processes by binding to promoter regions and regulating the global gene transcription levels. Pseudomonas syringae is a Gram-negative phytopathogenic bacterium harbouring 301 putative TFs in its genome, approximately 50 of which are responsible for virulence-related gene and pathway regulation. Over the past decades, RNA sequencing, chromatin immunoprecipitation sequencing, high-throughput systematic evolution of ligands by exponential enrichment, and other technologies have been applied to identify the functions of master regulators and their interactions in virulence-related pathways. This review summarises the recent advances in the regulatory networks of TFs involved in the type III secretion system (T3SS) and non-T3SS virulence-associated pathways, including motility, biofilm formation, quorum sensing, nucleotide-based secondary messengers, phytotoxins, siderophore production, and oxidative stress. Moreover, this review discusses the future perspectives in terms of TF-mediated pathogenesis mechanisms and provides novel insights that will help combat P. syringae infections based on the regulatory networks of TFs.http://www.sciencedirect.com/science/article/pii/S2001037022005050Pseudomonas syringaeTranscription factorsVirulenceRegulatory networks
spellingShingle Jiadai Huang
Chunyan Yao
Yue Sun
Quanjiang Ji
Xin Deng
Virulence-related regulatory network of Pseudomonas syringae
Pseudomonas syringae
Transcription factors
Virulence
Regulatory networks
title Virulence-related regulatory network of Pseudomonas syringae
title_full Virulence-related regulatory network of Pseudomonas syringae
title_fullStr Virulence-related regulatory network of Pseudomonas syringae
title_full_unstemmed Virulence-related regulatory network of Pseudomonas syringae
title_short Virulence-related regulatory network of Pseudomonas syringae
title_sort virulence related regulatory network of pseudomonas syringae
topic Pseudomonas syringae
Transcription factors
Virulence
Regulatory networks
url http://www.sciencedirect.com/science/article/pii/S2001037022005050
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