A natural language processing system for the efficient updating of highly curated pathophysiology mechanism knowledge graphs

Background: Biomedical knowledge graphs (KG) have become crucial for describing biological findings in a structured manner. To keep up with the constantly changing flow of knowledge, their embedded information must be regularly updated with the latest findings. Natural language processing (NLP) has...

وصف كامل

التفاصيل البيبلوغرافية
الحاوية / القاعدة:	Artificial Intelligence in the Life Sciences
المؤلفون الرئيسيون:	Negin Sadat Babaiha, Hassan Elsayed, Bide Zhang, Abish Kaladharan, Priya Sethumadhavan, Bruce Schultz, Jürgen Klein, Bruno Freudensprung, Vanessa Lage-Rupprecht, Alpha Tom Kodamullil, Marc Jacobs, Stefan Geissler, Sumit Madan, Martin Hofmann-Apitius
التنسيق:	مقال
اللغة:	الإنجليزية
منشور في:	Elsevier 2023-12-01
الموضوعات:	Knowledge graphs Relation extraction Natural language processing Biomedical text mining Biological expression language (BEL) Human brain pharmacome (HBP)
الوصول للمادة أونلاين:	http://www.sciencedirect.com/science/article/pii/S2667318523000223

مواد مشابهة

Rationalism in the face of GPT hypes: Benchmarking the output of large language models against human expert-curated biomedical knowledge graphs
حسب: Negin Sadat Babaiha, وآخرون
منشور في: (2024-06-01)

Three-layered semantic framework for public health intelligence
حسب: Sathvik Guru Rao, وآخرون
منشور في: (2025-09-01)

Unraveling the co-morbidity between COVID-19 and neurodegenerative diseases through multi-scale graph analysis: A systematic investigation of biological databases and text mining
حسب: Negin Sadat Babaiha, وآخرون
منشور في: (2025-12-01)

Heparin Binding Protein in Sepsis—A Comprehensive Overview of Pathophysiology, Clinical Usage and Utility as Biomarker
حسب: Foteini Tasouli, وآخرون
منشور في: (2025-09-01)

Is a unified blood pressure threshold feasible in the current scenario?
حسب: Saulat Siddique
منشور في: (2023-03-01)

Curating, Collecting, and Cataloguing Global COVID-19 Datasets for the Aim of Predicting Personalized Risk
حسب: Sepehr Golriz Khatami, وآخرون
منشور في: (2024-01-01)

Dining in the lions� den � Bel and the dragon, verses 28�42 (Old Greek/Theodotion)
حسب: Joseph J. de Bruyn
منشور في: (2015-03-01)

Daniel Dragonslayer – Bel and the dragon, Verses 23−27 (OG/Th)
حسب: Joseph J. de Bruyn
منشور في: (2015-04-01)

Teacher Competencies for Business English Purpose in the International Universities in Kurdistan
حسب: Korazon talib Abdullah
منشور في: (2020-10-01)

Vše, co jste chtěli vědět o feminismu…
حسب: Kateřina Machovcová
منشور في: (2014-08-01)

Meta-analysis of the accuracy of CD64, HBP, and PCT in differential diagnosis of sepsis patients
حسب: Bin Qiu, وآخرون
منشور في: (2025-05-01)

<i>Neisseria meningitidis</i> Factor H Binding Protein Surface Exposure on <i>Salmonella</i> Typhimurium GMMA Is Critical to Induce an Effective Immune Response against Both Diseases
حسب: Francesca Necchi, وآخرون
منشور في: (2021-06-01)

Serological and genetic analysis of a Bel subtype caused by a novel 29insG mutation: a case report
حسب: ZHOU Renlong, وآخرون
منشور في: (2024-10-01)

Heparin binding proteins in seminal plasma of breeding buffalo bulls and their relation with semen freezability and in vivo fertility
حسب: A K SINGH, وآخرون
منشور في: (2020-07-01)

IGF-I, leptina, insulina e proteínas associadas à qualidade do plasma seminal: ação local
حسب: Fernando Andrade Souza, وآخرون
منشور في: (2010-12-01)

Serum Crp Düzeylerinin Lomber Dejeneratif Hastalık Şiddetini Belirlemedeki Rolü
حسب: Yaşar Karataş
منشور في: (2020-03-01)

Model-based estimation of the leaf area of ozone-indicator tobacco (Nicotiana tabacum L.) plants under ambient ozone conditions
حسب: Evgenios Agathokleous, وآخرون
منشور في: (2023-01-01)

A hónap eseményei az EU bel- és igazságügyi együttműködése terén (október)
حسب: Erika Asztalos, وآخرون
منشور في: (2010-11-01)

A hónap eseményei az EU bel- és igazságügyi együttműködése terén (szeptember)
حسب: Erika Asztalos, وآخرون
منشور في: (2010-10-01)

Hasta Bakıcılarda Bel Ağrısı ve Yaşam Kalitesinin Değerlendirilmesi, Turgut Özal Tıp Merkezi Örneği
حسب: Ali Özer, وآخرون
منشور في: (2018-06-01)

Primary Aldosteronism and Long‐Term Cardiovascular Complications: Comparison of Medical Versus Surgical Treatment
حسب: Sofia Benameur, وآخرون
منشور في: (2025-08-01)

Integrating experimental and numerical approaches to simulate viscous debris flows using an HBP-SPH framework
حسب: Nikhil Kumar Pandey, وآخرون
منشور في: (2025-05-01)

Heparin-Binding Protein (HBP), Neutrophil Gelatinase-Associated Lipocalin (NGAL) and S100 Calcium-Binding Protein B (S100B) Can Confirm Bacterial Meningitis and Inform Adequate Antibiotic Treatment
حسب: Maria Obreja, وآخرون
منشور في: (2022-06-01)

AZU1: a new promising marker for infection in orthopedic and trauma patients?
حسب: Philipp Hemmann, وآخرون
منشور في: (2024-01-01)

Protective Effect and Mechanism of Xbp1s Regulating HBP/O-GlcNAcylation through GFAT1 on Brain Injury after SAH
حسب: Kefan Wu, وآخرون
منشور في: (2023-04-01)

Hepatitis B virus P protein initiates glycolytic bypass in HBV-related hepatocellular carcinoma via a FOXO3/miRNA-30b-5p/MINPP1 axis
حسب: Wenbiao Chen, وآخرون
منشور في: (2021-01-01)

National and regional prevalence rates of hypertension in Saudi Arabia: A descriptive analysis using the national survey data
حسب: Aqeel M. Alenazi, وآخرون
منشور في: (2023-04-01)

Multi-ontology embeddings approach on human-aligned multi-ontologies representation for gene-disease associations prediction
حسب: Yihao Wang, وآخرون
منشور في: (2023-11-01)

Çocukluk Çağı Sırt ve Bel Ağrıları.
حسب: Mehmet Bezer, وآخرون
منشور في: (2003-03-01)

Enhancement of red blood cell transfusion compatibility using CRISPR‐mediated erythroblast gene editing
حسب: Joseph Hawksworth, وآخرون
منشور في: (2018-04-01)

‘Bellography’: Life and Contributions of Ross and Joyce Bell, two New England Naturalists
حسب: John Spence, وآخرون
منشور في: (2011-11-01)

A hónap eseményei az EU bel- és igazságügyi együttműködés terén (november)
حسب: Erika Asztalos, وآخرون
منشور في: (2010-12-01)

HBP1 inhibits chicken preadipocyte differentiation by activating the STAT3 signaling via directly enhancing JAK2 expression
حسب: Hong-yan CHEN, وآخرون
منشور في: (2022-06-01)

Targets and management of hypertension in heart failure: focusing on the stages of heart failure
حسب: Huanhuan Miao, وآخرون
منشور في: (2022-09-01)

The use of echocardiography compared to electrocardiogram when screening for left ventricular hypertrophy in hypertensive patients: A cross‐sectional study
حسب: Marijn Marc Bult, وآخرون
منشور في: (2024-08-01)

Evaluating language model embeddings for Parkinson’s disease cohort harmonization using a novel manually curated variable mapping schema
حسب: Yasamin Salimi, وآخرون
منشور في: (2025-06-01)

O-GlcNAc of STING mediates antiviral innate immunity
حسب: Yujia Li, وآخرون
منشور في: (2024-03-01)

Nutlin-3a induces KRAS mutant/p53 wild type lung cancer specific methuosis-like cell death that is dependent on GFPT2
حسب: Dasom Kim, وآخرون
منشور في: (2023-12-01)

Motivation to move fast, motivation to wait and see: The association of prevention and promotion focus with clinicians’ implementation of the JNC‐7 hypertension treatment guidelines
حسب: Mechelle Sanders, وآخرون
منشور في: (2021-09-01)

Integrated transcriptomic and metabolomic analyses elucidate the regulatory role of SlBEL11 in tomato fruit ripening
حسب: Xiufen Dong, وآخرون
منشور في: (2025-09-01)