The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesis

AP2/ERF transcription factors regulate plants’ growth, development, and stress responses. In this study, the seed germination rate and seedling growth were reduced in the tomato slerf4-9 mutant. The fresh weight, drought weight, number of primary lateral roots (LRs), average root diameter, and numbe...

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التفاصيل البيبلوغرافية
الحاوية / القاعدة:Frontiers in Plant Science
المؤلفون الرئيسيون: ZhengFeng Fan, Li Zhang, SiQi Li, ShengQun Pang, YiBing Zhang, ChuanQiang Xu, YuDong Liu, MingFang Qi
التنسيق: مقال
اللغة:الإنجليزية
منشور في: Frontiers Media S.A. 2025-03-01
الموضوعات:
الوصول للمادة أونلاين:https://www.frontiersin.org/articles/10.3389/fpls.2025.1546092/full
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author ZhengFeng Fan
ZhengFeng Fan
Li Zhang
Li Zhang
SiQi Li
SiQi Li
ShengQun Pang
ShengQun Pang
YiBing Zhang
YiBing Zhang
ChuanQiang Xu
YuDong Liu
YuDong Liu
MingFang Qi
author_facet ZhengFeng Fan
ZhengFeng Fan
Li Zhang
Li Zhang
SiQi Li
SiQi Li
ShengQun Pang
ShengQun Pang
YiBing Zhang
YiBing Zhang
ChuanQiang Xu
YuDong Liu
YuDong Liu
MingFang Qi
author_sort ZhengFeng Fan
collection DOAJ
container_title Frontiers in Plant Science
description AP2/ERF transcription factors regulate plants’ growth, development, and stress responses. In this study, the seed germination rate and seedling growth were reduced in the tomato slerf4-9 mutant. The fresh weight, drought weight, number of primary lateral roots (LRs), average root diameter, and number of root tips were also decreased in the mutant. The findings suggest that SlERF4-9 plays a significant role in root growth and development. The results of RNA-seq analysis of young roots indicated that the mutation of SlERF4-9 did not affect the expression of genes related to auxin biosynthesis or signal transduction, but it did reduce the expression of the auxin efflux carrier genes SlAEC2 and SlPIN5. Moreover, the mutation of SlERF4-9 affected the distribution of auxin in the roots of DR5 × WT and DR5 × slerf4-9 hybrid tomato seedlings. However, the promoters of SlAEC2 and SlPIN5 do not possess the GCC-box or DRE elements, suggesting that SlERF4-9 does not directly regulate their transcription. In addition, the expression levels of the two Cycling DOF Factors (CDFs) SlCDF1 and SlCDF3 decreased in the roots of the slerf4-9 mutant. Moreover, the GCC-box was present in the promoters of SlCDF1 and SlCDF3. Therefore, exploring the regulatory relationships between SlERF4-9, SlCDF1/3, and SlAEC2/SlPIN5 will further our understanding of the molecular mechanisms of tomato root growth and development.
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spelling doaj-art-4aef91c2ddf5404f9c2041adccafda902025-08-20T03:44:28ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2025-03-011610.3389/fpls.2025.15460921546092The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesisZhengFeng Fan0ZhengFeng Fan1Li Zhang2Li Zhang3SiQi Li4SiQi Li5ShengQun Pang6ShengQun Pang7YiBing Zhang8YiBing Zhang9ChuanQiang Xu10YuDong Liu11YuDong Liu12MingFang Qi13College of Agriculture, Shihezi University, Shihezi, ChinaKey Laboratory of Special Sruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, ChinaCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, ChinaKey Laboratory of Agricultural Biotechnology of Liaoning Province, Shenyang Agricultural University, Shenyang, ChinaCollege of Agriculture, Shihezi University, Shihezi, ChinaKey Laboratory of Special Sruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, ChinaCollege of Agriculture, Shihezi University, Shihezi, ChinaKey Laboratory of Special Sruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, ChinaCollege of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, ChinaKey Laboratory of Agricultural Biotechnology of Liaoning Province, Shenyang Agricultural University, Shenyang, ChinaCollege of Horticulture, Shenyang Agricultural University, Shenyang, ChinaCollege of Agriculture, Shihezi University, Shihezi, ChinaKey Laboratory of Special Sruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, ChinaCollege of Horticulture, Shenyang Agricultural University, Shenyang, ChinaAP2/ERF transcription factors regulate plants’ growth, development, and stress responses. In this study, the seed germination rate and seedling growth were reduced in the tomato slerf4-9 mutant. The fresh weight, drought weight, number of primary lateral roots (LRs), average root diameter, and number of root tips were also decreased in the mutant. The findings suggest that SlERF4-9 plays a significant role in root growth and development. The results of RNA-seq analysis of young roots indicated that the mutation of SlERF4-9 did not affect the expression of genes related to auxin biosynthesis or signal transduction, but it did reduce the expression of the auxin efflux carrier genes SlAEC2 and SlPIN5. Moreover, the mutation of SlERF4-9 affected the distribution of auxin in the roots of DR5 × WT and DR5 × slerf4-9 hybrid tomato seedlings. However, the promoters of SlAEC2 and SlPIN5 do not possess the GCC-box or DRE elements, suggesting that SlERF4-9 does not directly regulate their transcription. In addition, the expression levels of the two Cycling DOF Factors (CDFs) SlCDF1 and SlCDF3 decreased in the roots of the slerf4-9 mutant. Moreover, the GCC-box was present in the promoters of SlCDF1 and SlCDF3. Therefore, exploring the regulatory relationships between SlERF4-9, SlCDF1/3, and SlAEC2/SlPIN5 will further our understanding of the molecular mechanisms of tomato root growth and development.https://www.frontiersin.org/articles/10.3389/fpls.2025.1546092/fullauxin efflux carriercycling DOF factorslateral root developmentSlERF4-9tomato
spellingShingle ZhengFeng Fan
ZhengFeng Fan
Li Zhang
Li Zhang
SiQi Li
SiQi Li
ShengQun Pang
ShengQun Pang
YiBing Zhang
YiBing Zhang
ChuanQiang Xu
YuDong Liu
YuDong Liu
MingFang Qi
The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesis
auxin efflux carrier
cycling DOF factors
lateral root development
SlERF4-9
tomato
title The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesis
title_full The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesis
title_fullStr The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesis
title_full_unstemmed The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesis
title_short The SlERF4-9-SlCDF1/3-SlAEC2/SlPIN5 module regulates tomato root morphogenesis
title_sort slerf4 9 slcdf1 3 slaec2 slpin5 module regulates tomato root morphogenesis
topic auxin efflux carrier
cycling DOF factors
lateral root development
SlERF4-9
tomato
url https://www.frontiersin.org/articles/10.3389/fpls.2025.1546092/full
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