Analysis of long-range chromatin contacts, compartments and looping between mouse embryonic stem cells, lens epithelium and lens fibers

Abstract Background Nuclear organization of interphase chromosomes involves individual chromosome territories, “open” and “closed” chromatin compartments, topologically associated domains (TADs) and chromatin loops. The DNA- and RNA-binding transcription factor CTCF together with the cohesin complex...

書誌詳細
出版年:	Epigenetics & Chromatin
主要な著者:	Michael Camerino, William Chang, Ales Cvekl
フォーマット:	論文
言語:	英語
出版事項:	BMC 2024-04-01
主題:	Chromatin CTCF Differentiation DNA looping ES cells Hi-C
オンライン･アクセス:	https://doi.org/10.1186/s13072-024-00533-x

類似資料

CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops
著者:: Yu Guo, 等
出版事項: (2018-10-01)

Through the lens of phase separation: intrinsically unstructured protein and chromatin looping
著者:: Ling Cai, 等
出版事項: (2023-12-01)

Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion
著者:: Arkadiy K. Golov, 等
出版事項: (2021-07-01)

Three-Dimensional Chromatin Structure of the EBV Genome: A Crucial Factor in Viral Infection
著者:: Lisa Beatrice Caruso, 等
出版事項: (2023-04-01)

TAD cliques predict key features of chromatin organization
著者:: Tharvesh M. Liyakat Ali, 等
出版事項: (2021-07-01)

The human leukemia virus HTLV-1 alters the structure and transcription of host chromatin in cis
著者:: Anat Melamed, 等
出版事項: (2018-06-01)

From compartments to loops: understanding the unique chromatin organization in neuronal cells
著者:: Diana Zagirova, 等
出版事項: (2024-05-01)

MYC Binding Near Transcriptional End Sites Regulates Basal Gene Expression, Read‐Through Transcription, and Intragenic Contacts
著者:: Huabo Wang, 等
出版事項: (2025-08-01)

Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness
著者:: H. M. A. Mohit Chowdhury, 等
出版事項: (2024-03-01)

Regulation of the three-dimensional chromatin organization by transposable elements in pig spleen
著者:: Yuzhuo Li, 等
出版事項: (2023-01-01)

A Lightweight Framework For Chromatin Loop Detection at the Single‐Cell Level
著者:: Fuzhou Wang, 等
出版事項: (2023-11-01)

Integration of Multiple Resolution Data in 3D Chromatin Reconstruction Using <i>ChromStruct</i>
著者:: Claudia Caudai, 等
出版事項: (2021-04-01)

DNA methylation insulates genic regions from CTCF loops near nuclear speckles
著者:: Shelby A Roseman, 等
出版事項: (2025-09-01)

CGLoop: a neural network framework for chromatin loop prediction
著者:: Junfeng Wang, 等
出版事項: (2025-04-01)

Interaction of CTCF and CTCFL in genome regulation through chromatin architecture during the spermatogenesis and carcinogenesis
著者:: Xin Tong, 等
出版事項: (2024-10-01)

Multiple long-range cis interactions generate CTCF insulator-dependent viral chromatin domains in quiescent HSV-1 genomes
著者:: Alyssa Richman, 等
出版事項: (2025-10-01)

A continuum of zinc finger transcription factor retention on native chromatin underlies dynamic genome organization
著者:: Siling Hu, 等
出版事項: (2024-05-01)

Considerations and caveats for analyzing chromatin compartments
著者:: Achyuth Kalluchi, 等
出版事項: (2023-04-01)

CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation
著者:: He Fang, 等
出版事項: (2025-03-01)

CD-Loop: a chromatin loop detection method based on the diffusion model
著者:: Jiquan Shen, 等
出版事項: (2024-05-01)

CTCF and Its Multi-Partner Network for Chromatin Regulation
著者:: Aylin Del Moral-Morales, 等
出版事項: (2023-05-01)

Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries
著者:: Luca Nanni, 等
出版事項: (2020-08-01)

Cumulative contact frequency of a chromatin region is an intrinsic property linked to its function
著者:: Margarita D. Samborskaia, 等
出版事項: (2020-08-01)

CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis
著者:: Xue Yang, 等
出版事項: (2025-02-01)

Closing the loops: chromatin loop dynamics after DNA damage
著者:: Pierre-Alexandre Vidi, 等
出版事項: (2025-12-01)

guidedNOMe-seq quantifies chromatin states at single allele resolution for hundreds of custom regions in parallel
著者:: Michaela Schwaiger, 等
出版事項: (2024-07-01)

The insulator EACBE regulates V(D)J recombination of Tcrd gene by modulating chromatin organization
著者:: Yongchang Zhu, 等
出版事項: (2025-07-01)

Loop Catalog: a comprehensive HiChIP database of human and mouse samples
著者:: Joaquin Reyna, 等
出版事項: (2025-06-01)

At the Crossroad of Gene Regulation and Genome Organization: Potential Roles for ATP-Dependent Chromatin Remodelers in the Regulation of CTCF-Mediated 3D Architecture
著者:: Aktan Alpsoy, 等
出版事項: (2021-03-01)

Chromium disrupts chromatin organization and CTCF access to its cognate sites in promoters of differentially expressed genes
著者:: Andrew VonHandorf, 等
出版事項: (2018-04-01)

Chromatin insulation orchestrates matrix metalloproteinase gene cluster expression reprogramming in aggressive breast cancer tumors
著者:: Pere Llinàs-Arias, 等
出版事項: (2023-11-01)

CTCF, Cohesin, and Chromatin in Human Cancer
著者:: Sang-Hyun Song, 等
出版事項: (2017-12-01)

A novel cis-regulatory element regulates αD and αA-globin gene expression in chicken erythroid cells
著者:: Josué Cortés-Fernández de Lara, 等
出版事項: (2024-04-01)

ZNF143 in Chromatin Looping and Gene Regulation
著者:: Bingyu Ye, 等
出版事項: (2020-04-01)

ATP-Dependent Chromatin Remodeler CHD9 Controls the Proliferation of Embryonic Stem Cells in a Cell Culture Condition-Dependent Manner
著者:: Hyunjin Yoo, 等
出版事項: (2020-11-01)

CTCF and cohesin regulate chromatin loop stability with distinct dynamics
著者:: Anders S Hansen, 等
出版事項: (2017-05-01)

Artificially inserted strong promoter containing multiple G-quadruplexes induces long-range chromatin modification
著者:: Shuvra Shekhar Roy, 等
出版事項: (2024-08-01)

Unveiling Multi‐Scale Architectural Features in Single‐Cell Hi‐C Data Using scCAFE
著者:: Fuzhou Wang, 等
出版事項: (2025-06-01)

Three‐dimensional genome structure shapes the recombination landscape of chromatin features during female germline stem cell development
著者:: Geng G. Tian, 等
出版事項: (2022-06-01)

Multiomics Analysis Reveals Novel Genetic Determinants for Lens Differentiation, Structure, and Transparency
著者:: Joshua Disatham, 等
出版事項: (2023-04-01)