Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus
Abstract Grass pea (Lathyrus sativus L.) is a rich source of protein cultivated as an insurance crop in Ethiopia, Eritrea, India, Bangladesh, and Nepal. Its resilience to both drought and flooding makes it a promising crop for ensuring food security in a changing climate. The lack of genetic resourc...
| 發表在: | Nature Communications |
|---|---|
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| 格式: | Article |
| 語言: | 英语 |
| 出版: |
Nature Portfolio
2023-02-01
|
| 在線閱讀: | https://doi.org/10.1038/s41467-023-36503-2 |
| _version_ | 1850329205961654272 |
|---|---|
| author | Anne Edwards Isaac Njaci Abhimanyu Sarkar Zhouqian Jiang Gemy George Kaithakottil Christopher Moore Jitender Cheema Clare E. M. Stevenson Martin Rejzek Petr Novák Marielle Vigouroux Martin Vickers Roland H. M. Wouters Pirita Paajanen Burkhard Steuernagel Jonathan D. Moore Janet Higgins David Swarbreck Stefan Martens Colin Y. Kim Jing-Ke Weng Sagadevan Mundree Benjamin Kilian Shiv Kumar Matt Loose Levi Yant Jiří Macas Trevor L. Wang Cathie Martin Peter M. F. Emmrich |
| author_facet | Anne Edwards Isaac Njaci Abhimanyu Sarkar Zhouqian Jiang Gemy George Kaithakottil Christopher Moore Jitender Cheema Clare E. M. Stevenson Martin Rejzek Petr Novák Marielle Vigouroux Martin Vickers Roland H. M. Wouters Pirita Paajanen Burkhard Steuernagel Jonathan D. Moore Janet Higgins David Swarbreck Stefan Martens Colin Y. Kim Jing-Ke Weng Sagadevan Mundree Benjamin Kilian Shiv Kumar Matt Loose Levi Yant Jiří Macas Trevor L. Wang Cathie Martin Peter M. F. Emmrich |
| author_sort | Anne Edwards |
| collection | DOAJ |
| container_title | Nature Communications |
| description | Abstract Grass pea (Lathyrus sativus L.) is a rich source of protein cultivated as an insurance crop in Ethiopia, Eritrea, India, Bangladesh, and Nepal. Its resilience to both drought and flooding makes it a promising crop for ensuring food security in a changing climate. The lack of genetic resources and the crop’s association with the disease neurolathyrism have limited the cultivation of grass pea. Here, we present an annotated, long read-based assembly of the 6.5 Gbp L. sativus genome. Using this genome sequence, we have elucidated the biosynthetic pathway leading to the formation of the neurotoxin, β-L-oxalyl-2,3-diaminopropionic acid (β-L-ODAP). The final reaction of the pathway depends on an interaction between L. sativus acyl-activating enzyme 3 (LsAAE3) and a BAHD-acyltransferase (LsBOS) that form a metabolon activated by CoA to produce β-L-ODAP. This provides valuable insight into the best approaches for developing varieties which produce substantially less toxin. |
| format | Article |
| id | doaj-art-66071d22de3b49e497d4e23d84d5e4d0 |
| institution | Directory of Open Access Journals |
| issn | 2041-1723 |
| language | English |
| publishDate | 2023-02-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| spelling | doaj-art-66071d22de3b49e497d4e23d84d5e4d02025-08-19T23:18:57ZengNature PortfolioNature Communications2041-17232023-02-0114111610.1038/s41467-023-36503-2Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativusAnne Edwards0Isaac Njaci1Abhimanyu Sarkar2Zhouqian Jiang3Gemy George Kaithakottil4Christopher Moore5Jitender Cheema6Clare E. M. Stevenson7Martin Rejzek8Petr Novák9Marielle Vigouroux10Martin Vickers11Roland H. M. Wouters12Pirita Paajanen13Burkhard Steuernagel14Jonathan D. Moore15Janet Higgins16David Swarbreck17Stefan Martens18Colin Y. Kim19Jing-Ke Weng20Sagadevan Mundree21Benjamin Kilian22Shiv Kumar23Matt Loose24Levi Yant25Jiří Macas26Trevor L. Wang27Cathie Martin28Peter M. F. Emmrich29John Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkEarlham Institute, Norwich Research Park, Colney LaneSchool of Life Sciences, University of Nottingham, University ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkInstitute of Plant Molecular Biology, Biology Centre CASJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkEarlham Institute, Norwich Research Park, Colney LaneEarlham Institute, Norwich Research Park, Colney LaneResearch and Innovation Centre, Fondazione Edmund MachWhitehead Institute for Biomedical ResearchWhitehead Institute for Biomedical ResearchQueensland University of TechnologyGlobal Crop Diversity TrustInternational Center for Agricultural Research in the Dry Areas, Avenue Hafiane CherkaouiSchool of Life Sciences, University of Nottingham, University ParkSchool of Life Sciences, University of Nottingham, University ParkInstitute of Plant Molecular Biology, Biology Centre CASJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkJohn Innes Centre, Norwich Research ParkAbstract Grass pea (Lathyrus sativus L.) is a rich source of protein cultivated as an insurance crop in Ethiopia, Eritrea, India, Bangladesh, and Nepal. Its resilience to both drought and flooding makes it a promising crop for ensuring food security in a changing climate. The lack of genetic resources and the crop’s association with the disease neurolathyrism have limited the cultivation of grass pea. Here, we present an annotated, long read-based assembly of the 6.5 Gbp L. sativus genome. Using this genome sequence, we have elucidated the biosynthetic pathway leading to the formation of the neurotoxin, β-L-oxalyl-2,3-diaminopropionic acid (β-L-ODAP). The final reaction of the pathway depends on an interaction between L. sativus acyl-activating enzyme 3 (LsAAE3) and a BAHD-acyltransferase (LsBOS) that form a metabolon activated by CoA to produce β-L-ODAP. This provides valuable insight into the best approaches for developing varieties which produce substantially less toxin.https://doi.org/10.1038/s41467-023-36503-2 |
| spellingShingle | Anne Edwards Isaac Njaci Abhimanyu Sarkar Zhouqian Jiang Gemy George Kaithakottil Christopher Moore Jitender Cheema Clare E. M. Stevenson Martin Rejzek Petr Novák Marielle Vigouroux Martin Vickers Roland H. M. Wouters Pirita Paajanen Burkhard Steuernagel Jonathan D. Moore Janet Higgins David Swarbreck Stefan Martens Colin Y. Kim Jing-Ke Weng Sagadevan Mundree Benjamin Kilian Shiv Kumar Matt Loose Levi Yant Jiří Macas Trevor L. Wang Cathie Martin Peter M. F. Emmrich Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus |
| title | Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus |
| title_full | Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus |
| title_fullStr | Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus |
| title_full_unstemmed | Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus |
| title_short | Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus |
| title_sort | genomics and biochemical analyses reveal a metabolon key to β l odap biosynthesis in lathyrus sativus |
| url | https://doi.org/10.1038/s41467-023-36503-2 |
| work_keys_str_mv | AT anneedwards genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT isaacnjaci genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT abhimanyusarkar genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT zhouqianjiang genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT gemygeorgekaithakottil genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT christophermoore genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT jitendercheema genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT clareemstevenson genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT martinrejzek genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT petrnovak genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT mariellevigouroux genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT martinvickers genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT rolandhmwouters genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT piritapaajanen genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT burkhardsteuernagel genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT jonathandmoore genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT janethiggins genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT davidswarbreck genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT stefanmartens genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT colinykim genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT jingkeweng genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT sagadevanmundree genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT benjaminkilian genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT shivkumar genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT mattloose genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT leviyant genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT jirimacas genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT trevorlwang genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT cathiemartin genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus AT petermfemmrich genomicsandbiochemicalanalysesrevealametabolonkeytoblodapbiosynthesisinlathyrussativus |
