Projection-Based Neighborhood Non-Negative Matrix Factorization for lncRNA-Protein Interaction Prediction

Many long ncRNAs (lncRNA) make their effort by interacting with the corresponding RNA-binding proteins, and identifying the interactions between lncRNAs and proteins is important to understand the functions of lncRNA. Compared with the time-consuming and laborious experimental methods, more and more...

Full description

Bibliographic Details
Published in:	Frontiers in Genetics
Main Authors:	Yingjun Ma, Tingting He, Xingpeng Jiang
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2019-11-01
Subjects:	lncRNA-protein interaction feature projection neighborhood completion graph non-negative matrix factorization kernel neighborhood similarity
Online Access:	https://www.frontiersin.org/article/10.3389/fgene.2019.01148/full

Similar Items

Prediction of lncRNA–Disease Associations via Closest Node Weight Graphs of the Spatial Neighborhood Based on the Edge Attention Graph Convolutional Network
by: Jianwei Li, et al.
Published: (2022-01-01)

LPI-SKF: Predicting lncRNA-Protein Interactions Using Similarity Kernel Fusions
by: Yuan-Ke Zhou, et al.
Published: (2020-12-01)

gGATLDA: lncRNA-disease association prediction based on graph-level graph attention network
by: Li Wang, et al.
Published: (2022-01-01)

LncRNA Expression Profile-Based Matrix Factorization for Predicting lncRNA- Disease Association
by: Jihwan Ha
Published: (2024-01-01)

LncRNA-Disease Association Prediction Using Two-Side Sparse Self-Representation
by: Le Ou-Yang, et al.
Published: (2019-05-01)

BiGAN: LncRNA-disease association prediction based on bidirectional generative adversarial network
by: Qiang Yang, et al.
Published: (2021-06-01)

About the second neighborhood problem in tournaments missing disjoint stars
by: Salman Ghazal
Published: (2016-10-01)

A remark on the second neighborhood problem
by: Salman Ghazal
Published: (2015-10-01)

One-Step Clustering with Adaptively Local Kernels and a Neighborhood Kernel
by: Cuiling Chen, et al.
Published: (2023-09-01)

Editorial: lncRNA in plants: function, mechanisms and applications
by: Jun Cui
Published: (2023-06-01)

Planning According to New Urbanism: the Ostadsara Neighborhood Case Study
by: Nader Zali, et al.
Published: (2016-12-01)

Multi-hop neighborhood joint sampling method for entity alignment
by: QI Yu-Ting, et al.
Published: (2024-11-01)

Prediction of lncRNA and disease associations based on residual graph convolutional networks with attention mechanism
by: Shengchang Wang, et al.
Published: (2024-03-01)

Expression profiling of circulating lncRNA GIAT4RA, lncRNA AATBC, lncRNA Sirt1-AS, and SMARCB1 in lung cancer patients
by: Neveen A. Hussein, et al.
Published: (2024-09-01)

Assessing the Sustainability Level of Organic and Planned Neighborhoods Using UN-HABITAT Indicators (Case Study: Noghan and Sajad Neighborhoods of Mashhad)
by: Mahmoud Jomehpour, et al.
Published: (2020-05-01)

Effects of neighborhood-based collaborative filtering parameters on their blockbuster bias performances
by: Emre Yalçın
Published: (2022-08-01)

Neighborhood Connection Density-Neighborhood Morphology Connection: The Case of Antalya Kaleiçi
by: Havva Özdoğan
Published: (2024-12-01)

BPLLDA: Predicting lncRNA-Disease Associations Based on Simple Paths With Limited Lengths in a Heterogeneous Network
by: Xiaofang Xiao, et al.
Published: (2018-10-01)

Neighborhood structure, more than soil nutrients, influences net tree interactions among different functional types in a temperate forest
by: Tingting Liu, et al.
Published: (2024-10-01)

The Consequences of the Central Neighborhoods of Tehran's Approach to Indicators of Social Capital
by: ali fallahi, et al.
Published: (2016-05-01)

Multiview Consensus Graph Learning for lncRNA–Disease Association Prediction
by: Haojiang Tan, et al.
Published: (2020-02-01)

The influence of nativity/birthplace, neighborhood cohesion, and duration lived in the neighborhood on psychological distress
by: Lohuwa Mamudu, et al.
Published: (2024-07-01)

Lipid−lncRNA Crossroads: An Overview of Interactions Between Lipids and lncRNA
by: Andrea Bayona-Hernandez, et al.
Published: (2025-08-01)

Applying negative sample denoising and multi-view feature for lncRNA-disease association prediction
by: Dengju Yao, et al.
Published: (2024-01-01)

Graph Operations and Neighborhood Polynomials
by: Alipour Maryam, et al.
Published: (2021-08-01)

Study of living standards in Sahebgharaniyeh neighborhood of Tehran
by: Mehran Mohammadi, et al.
Published: (2022-03-01)

Identification of associations between lncRNA and drug resistance based on deep learning and attention mechanism
by: Meihong Gao, et al.
Published: (2023-04-01)

SPCMLMI: A structural perturbation-based matrix completion method to predict lncRNA–miRNA interactions
by: Mei-Neng Wang, et al.
Published: (2022-11-01)

Regenerating Spatial Structure of Traditional Neighborhoods Based on Their Spine Revival Approach, Case Study: Hokm Abad Neighborhood of Tabriz
by: Akbar Abdollahzadeh Taraf, et al.
Published: (2021-10-01)

LncRNA-Based Classification of Triple Negative Breast Cancer Revealed Inherent Tumor Heterogeneity and Vulnerabilities
by: Radhakrishnan Vishnubalaji, et al.
Published: (2022-06-01)

Tilings with the neighborhood property
by: Linda S. Fosnaugh, et al.
Published: (1996-01-01)

The effect of green spaces (neighborhood park) on the mental health (happiness) of the residents, case study of Mirdamad and Maghsodieh neighborhoods in Tabriz city
by: Amirreza Hashempoor, et al.
Published: (2021-08-01)

Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions
by: Xiaoxiong Zheng, et al.
Published: (2017-10-01)

Visualizing and Communicating Neighborhood Identities
by: Vikas Mehta, et al.
Published: (2021-12-01)

GMFLDA: Improved Prediction of lncRNA-Disease Association via Graph Convolutional Network
by: Kwangsu Kim, et al.
Published: (2025-01-01)

Entity Alignment Method Based on Neighborhood Aggregation
by: TAN Yuanzhen, LI Xiaonan, LI Guanyu
Published: (2022-06-01)

Association of lncRNA AGAP11 with prognosis and malignant progression in triple-negative breast cancer
by: Guihua Fu, et al.
Published: (2026-03-01)

Exploration of the involvement of LncRNA in HIV-associated encephalitis using bioinformatics
by: Diangeng Li, et al.
Published: (2018-10-01)

Computational analysis for eccentric neighborhood Zagreb indices and their significance
by: Hanan Ahmed, et al.
Published: (2023-07-01)

Some notes on soft neighborhood
by: Mustafa Burc Kandemir, et al.
Published: (2023-06-01)