SAMSA2: a standalone metatranscriptome analysis pipeline

Abstract Background Complex microbial communities are an area of growing interest in biology. Metatranscriptomics allows researchers to quantify microbial gene expression in an environmental sample via high-throughput sequencing. Metatranscriptomic experiments are computationally intensive because t...

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Bibliographic Details
Published in:	BMC Bioinformatics
Main Authors:	Samuel T. Westreich, Michelle L. Treiber, David A. Mills, Ian Korf, Danielle G. Lemay
Format:	Article
Language:	English
Published:	BMC 2018-05-01
Subjects:	Metatranscriptomics Metagenomics Pipeline Software Bioinformatics Open access
Online Access:	http://link.springer.com/article/10.1186/s12859-018-2189-z

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