Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications

Nowadays, brain tumors have become a leading cause of mortality worldwide. The brain cells in the tumor grow abnormally and badly affect the surrounding brain cells. These cells could be either cancerous or non-cancerous types, and their symptoms can vary depending on their location, size, and type....

Full description

Bibliographic Details
Published in:Life
Main Authors: Abdullah A. Asiri, Ahmad Shaf, Tariq Ali, Muhammad Aamir, Muhammad Irfan, Saeed Alqahtani, Khlood M. Mehdar, Hanan Talal Halawani, Ali H. Alghamdi, Abdullah Fahad A. Alshamrani, Samar M. Alqhtani
Format: Article
Language:English
Published: MDPI AG 2023-06-01
Subjects:
Online Access:https://www.mdpi.com/2075-1729/13/7/1449
_version_ 1849896876057296896
author Abdullah A. Asiri
Ahmad Shaf
Tariq Ali
Muhammad Aamir
Muhammad Irfan
Saeed Alqahtani
Khlood M. Mehdar
Hanan Talal Halawani
Ali H. Alghamdi
Abdullah Fahad A. Alshamrani
Samar M. Alqhtani
author_facet Abdullah A. Asiri
Ahmad Shaf
Tariq Ali
Muhammad Aamir
Muhammad Irfan
Saeed Alqahtani
Khlood M. Mehdar
Hanan Talal Halawani
Ali H. Alghamdi
Abdullah Fahad A. Alshamrani
Samar M. Alqhtani
author_sort Abdullah A. Asiri
collection DOAJ
container_title Life
description Nowadays, brain tumors have become a leading cause of mortality worldwide. The brain cells in the tumor grow abnormally and badly affect the surrounding brain cells. These cells could be either cancerous or non-cancerous types, and their symptoms can vary depending on their location, size, and type. Due to its complex and varying structure, detecting and classifying the brain tumor accurately at the initial stages to avoid maximum death loss is challenging. This research proposes an improved fine-tuned model based on CNN with ResNet50 and U-Net to solve this problem. This model works on the publicly available dataset known as TCGA-LGG and TCIA. The dataset consists of 120 patients. The proposed CNN and fine-tuned ResNet50 model are used to detect and classify the tumor or no-tumor images. Furthermore, the U-Net model is integrated for the segmentation of the tumor regions correctly. The model performance evaluation metrics are accuracy, intersection over union, dice similarity coefficient, and similarity index. The results from fine-tuned ResNet50 model are IoU: 0.91, DSC: 0.95, SI: 0.95. In contrast, U-Net with ResNet50 outperforms all other models and correctly classified and segmented the tumor region.
format Article
id doaj-art-7db5ec79b32847dc8d4fcbb7f917a413
institution Directory of Open Access Journals
issn 2075-1729
language English
publishDate 2023-06-01
publisher MDPI AG
record_format Article
spelling doaj-art-7db5ec79b32847dc8d4fcbb7f917a4132025-08-20T01:01:14ZengMDPI AGLife2075-17292023-06-01137144910.3390/life13071449Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI ApplicationsAbdullah A. Asiri0Ahmad Shaf1Tariq Ali2Muhammad Aamir3Muhammad Irfan4Saeed Alqahtani5Khlood M. Mehdar6Hanan Talal Halawani7Ali H. Alghamdi8Abdullah Fahad A. Alshamrani9Samar M. Alqhtani10Radiological Sciences Department, College of Applied Medical Sciences, Najran University, Najran 61441, Saudi ArabiaDepartment of Computer Science, Sahiwal Campus, COMSATS University Islamabad, Sahiwal 57000, PakistanDepartment of Computer Science, Sahiwal Campus, COMSATS University Islamabad, Sahiwal 57000, PakistanDepartment of Computer Science, Sahiwal Campus, COMSATS University Islamabad, Sahiwal 57000, PakistanElectrical Engineering Department, College of Engineering, Najran University, Najran 61441, Saudi ArabiaRadiological Sciences Department, College of Applied Medical Sciences, Najran University, Najran 61441, Saudi ArabiaAnatomy Department, Medicine College, Najran University, Najran 61441, Saudi ArabiaComputer Science Department, College of Computer Science and Information Systems, Najran University, Najran 61441, Saudi ArabiaDepartment of Radiological Sciences, Faculty of Applied Medical Sciences, The University of Tabuk, Tabuk 47512, Saudi ArabiaDepartment of Diagnostic Radiology Technology, College of Applied Medical Sciences, Taibah University, Madinah 42353, Saudi ArabiaDepartment of Information Systems, College of Computer Science and Information Systems, Najran University, Najran 61441, Saudi ArabiaNowadays, brain tumors have become a leading cause of mortality worldwide. The brain cells in the tumor grow abnormally and badly affect the surrounding brain cells. These cells could be either cancerous or non-cancerous types, and their symptoms can vary depending on their location, size, and type. Due to its complex and varying structure, detecting and classifying the brain tumor accurately at the initial stages to avoid maximum death loss is challenging. This research proposes an improved fine-tuned model based on CNN with ResNet50 and U-Net to solve this problem. This model works on the publicly available dataset known as TCGA-LGG and TCIA. The dataset consists of 120 patients. The proposed CNN and fine-tuned ResNet50 model are used to detect and classify the tumor or no-tumor images. Furthermore, the U-Net model is integrated for the segmentation of the tumor regions correctly. The model performance evaluation metrics are accuracy, intersection over union, dice similarity coefficient, and similarity index. The results from fine-tuned ResNet50 model are IoU: 0.91, DSC: 0.95, SI: 0.95. In contrast, U-Net with ResNet50 outperforms all other models and correctly classified and segmented the tumor region.https://www.mdpi.com/2075-1729/13/7/1449brain tumorU-NetResNet50CNNsegmentation
spellingShingle Abdullah A. Asiri
Ahmad Shaf
Tariq Ali
Muhammad Aamir
Muhammad Irfan
Saeed Alqahtani
Khlood M. Mehdar
Hanan Talal Halawani
Ali H. Alghamdi
Abdullah Fahad A. Alshamrani
Samar M. Alqhtani
Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
brain tumor
U-Net
ResNet50
CNN
segmentation
title Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_full Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_fullStr Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_full_unstemmed Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_short Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_sort brain tumor detection and classification using fine tuned cnn with resnet50 and u net model a study on tcga lgg and tcia dataset for mri applications
topic brain tumor
U-Net
ResNet50
CNN
segmentation
url https://www.mdpi.com/2075-1729/13/7/1449
work_keys_str_mv AT abdullahaasiri braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT ahmadshaf braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT tariqali braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT muhammadaamir braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT muhammadirfan braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT saeedalqahtani braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT khloodmmehdar braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT hanantalalhalawani braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT alihalghamdi braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT abdullahfahadaalshamrani braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications
AT samarmalqhtani braintumordetectionandclassificationusingfinetunedcnnwithresnet50andunetmodelastudyontcgalggandtciadatasetformriapplications