Mapping and Candidate Gene Prediction of <i>qPL7-25</i>: A Panicle Length QTL in Dongxiang Wild Rice

Panicle length (PL) is an important trait closely related to rice yield. More than 200 quantitative trait loci (QTL) for PL have been identified, but only a few can be used for breeding. Dongxiang wild rice contains many excellent genes, and mining favorable PL-related QTL from DXWR is helpful for r...

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Published in:Agriculture
Main Authors: Sanfeng Li, Yuchun Rao, Penggen Duan, Zhonghao Wang, Ping Hu, Ruoqian Yu, Chenxi Luo, Mengna Tang, Caolin Lu, Yuexing Wang, Yijian Mao
Format: Article
Language:English
Published: MDPI AG 2023-08-01
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Online Access:https://www.mdpi.com/2077-0472/13/8/1623
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Summary:Panicle length (PL) is an important trait closely related to rice yield. More than 200 quantitative trait loci (QTL) for PL have been identified, but only a few can be used for breeding. Dongxiang wild rice contains many excellent genes, and mining favorable PL-related QTL from DXWR is helpful for rice variety improvement. Here, we report a QTL analysis for PL using a recombinant inbred line population consisting of 143 individuals derived from a cross between Dongxiang wild rice and indica cultivar Guangluai 4. A total of four QTL (<i>qPL1-37</i>, <i>qPL4-26</i>, <i>qPL7-25</i>, and <i>qPL8-4</i>) for PL were identified and located on chromosomes 1, 4, 7, and 8. Among them, <i>qPL7-25</i> showed the largest F-value of 32.32 and 16.80, and the QTL explained 18.66% and 13.06% of the phenotypic variation of Dongxiang wild rice in Hangzhou and Hainan, respectively. QTL mapping was performed using a population of 1800 individuals derived from the crossing of NIL-<i>qPL7-25</i> and GLA4. <i>qPL7-25</i> was located between two InDel markers, InDel-24591 and InDel-24710, in a 119 kb region containing 14 predicted genes. Using Sanger sequencing and qRT-PCR analysis, we propose that <i>LOC_Os07g41200</i> is probably a new allele of the well-known <i>GL7</i> gene, which affects grain length and appearance quality in rice. These results provide new insights into the use of molecular marker-assisted selection for breeding high-yielding and high-quality rice varieties.
ISSN:2077-0472