DNA Metabarcoding Using Indexed Primers: Workflow to Characterize Bacteria, Fungi, Plants, and Arthropods from Environmental Samples

Environmental DNA from bulk materials can be analyzed to gain an understanding of the bacterial, fungal, plant, and/or arthropod communities present. DNA metabarcoding is widely used to characterize these biological communities, by amplifying “barcode” regions and sequencing these amplicons via next...

وصف كامل

التفاصيل البيبلوغرافية
الحاوية / القاعدة:	Diversity
المؤلفون الرئيسيون:	Teresa M. Tiedge, Jorden T. Rabasco, Kelly A. Meiklejohn
التنسيق:	مقال
اللغة:	الإنجليزية
منشور في:	MDPI AG 2025-02-01
الموضوعات:	DNA metabarcoding bulk environmental samples indexed primers plants arthropods fungi
الوصول للمادة أونلاين:	https://www.mdpi.com/1424-2818/17/2/137

مواد مشابهة

Validation of COI metabarcoding primers for terrestrial arthropods
حسب: Vasco Elbrecht, وآخرون
منشور في: (2019-10-01)

Navigating diversity: primer impact on arthropod recovery in molecular environmental monitoring in tropical Amazon
حسب: Fernanda Valente Penner, وآخرون
منشور في: (2024-12-01)

Navigating the seven seas of arthropod collection protocols: Metabarcoding arthropod diversity in a tropical forest
حسب: Daniel Souto‐Vilarós, وآخرون
منشور في: (2025-10-01)

Unearthing soil arthropod diversity through DNA metabarcoding
حسب: Monica R. Young, وآخرون
منشور في: (2022-02-01)

Optimizing eDNA Metabarcoding Techniques for Assessing Arthropod Communities in Tree‐Related Microhabitats
حسب: Mohammad Jamil Shuvo, وآخرون
منشور في: (2025-01-01)

Development of environmental DNA metabarcoding primers for marine mollusks and comparison with published primers
حسب: Xiaojing Shi, وآخرون
منشور في: (2024-05-01)

Metabarcoding options to study eukaryotic endoparasites of birds
حسب: Vincent Bourret, وآخرون
منشور في: (2021-08-01)

A novel metabarcoding primer pair for environmental DNA analysis of Cephalopoda (Mollusca) targeting the nuclear 18S rRNA region
حسب: Daniëlle S. W. de Jonge, وآخرون
منشور في: (2021-02-01)

Plant Bugs Predators (Hemiptera: Heteroptera: Miridae) with References to Arthropods and Fungi in Brazil
حسب: BÁRBARA C.F. NOGUEIRA, وآخرون

Illuminating arthropod diversity in a tropical forest: Assessing biodiversity by automatic light trapping and DNA metabarcoding
حسب: Daniel Souto‐Vilarós, وآخرون
منشور في: (2024-03-01)

Environmental DNA from archived leaves reveals widespread temporal turnover and biotic homogenization in forest arthropod communities
حسب: Henrik Krehenwinkel, وآخرون
منشور في: (2022-11-01)

VertU: universal multilocus primer sets for eDNA metabarcoding of vertebrate diversity, evaluated by both artificial and natural cases
حسب: Zichen Wang, وآخرون
منشور في: (2023-06-01)

μCeta: A Set of Cetacean‐Specific Primers for Environmental DNA Metabarcoding With Minimal Amplification of Non‐Target Vertebrates
حسب: Masayuki Ushio, وآخرون
منشور في: (2025-09-01)

Development of PCR Blocking Primers Enabling DNA Metabarcoding Analysis of Dietary Composition in Hematophagous Sea Lamprey
حسب: Conor O'Kane, وآخرون
منشور في: (2025-08-01)

Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference
حسب: Valérie Laval, وآخرون
منشور في: (2021-08-01)

Extended studies on the diversity of arthropod-pathogenic fungi in Austria and Poland
حسب: Cezary Tkaczyk, وآخرون
منشور في: (2013-12-01)

A novel two-step metabarcoding approach improves soil microbiome biodiversity assessment
حسب: Marcin Musiałowski, وآخرون
منشور في: (2025-09-01)

The utility of combining deep learning with metabarcoding to model biodiversity dynamics at a national scale
حسب: Adrian Baggström, وآخرون
منشور في: (2025-12-01)

Primer set evaluation and sampling method assessment for the monitoring of fish communities in the North‐western part of the Mediterranean Sea through eDNA metabarcoding
حسب: Sylvain Roblet, وآخرون
منشور في: (2024-05-01)

Persisting roadblocks in arthropod monitoring using non-destructive metabarcoding from collection media of passive traps
حسب: Lucas Sire, وآخرون
منشور في: (2023-10-01)

Targeted eDNA Metabarcoding Reveals New Populations of a Range‐Limited Stonefly
حسب: Graham A. McCulloch, وآخرون
منشور في: (2025-04-01)

Enhancing metabarcoding of freshwater biotic communities: A new online tool for primer selection and exploring data from 14 primer pairs
حسب: Orianne Tournayre, وآخرون
منشور في: (2024-07-01)

COI metabarcoding of large benthic Foraminifera: Method validation for application in ecological studies
حسب: Elsa B. Girard, وآخرون
منشور في: (2022-11-01)

Novel eDNA approaches to monitor Western honey bee (Apis mellifera L.) microbial and arthropod communities
حسب: Leigh Boardman, وآخرون
منشور في: (2024-01-01)

Brute force prey metabarcoding to explore the diets of small invertebrates
حسب: Snorre Flo, وآخرون
منشور في: (2024-05-01)

Sampling and metabarcoding of arthropod environmental DNA traces from flowers
حسب: David Wari, وآخرون
منشور في: (2025-06-01)

Advancing aquatic biodiversity assessments of invertebrates using eDNA metabarcoding: A systematic evaluation of primers for marine and freshwater communities
حسب: Xiaoyu Chen, وآخرون
منشور في: (2025-10-01)

Assessing arthropod diversity metrics derived from stream environmental DNA: spatiotemporal variation and paired comparisons with manual sampling
حسب: Aaron A. Aunins, وآخرون
منشور في: (2023-03-01)

Abundance of mycophagous arthropods present on different species of fungi in relation to resource abundance at different spatial scales
حسب: Kazuo H. TAKAHASHI, وآخرون
منشور في: (2005-03-01)

Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues
حسب: Chloé Viotti, وآخرون
منشور في: (2024-04-01)

DNA metabarcoding allows non-invasive identification of arthropod prey provisioned to nestling Rufous hummingbirds (Selasphorus rufus)
حسب: Alison J. Moran, وآخرون
منشور في: (2019-03-01)

Influence of Host Sex on Mycobiome Structure in Porcellio laevis Using Metabarcoding Analysis
حسب: Seung-Yoon Oh, وآخرون
منشور في: (2024-12-01)

Influence of DNA extraction kits on freshwater fungal DNA metabarcoding
حسب: Shunsuke Matsuoka, وآخرون
منشور في: (2022-05-01)

Corrigendum: Validation and Development of COI Metabarcoding Primers for Freshwater Macroinvertebrate Bioassessment
حسب: Vasco Elbrecht, وآخرون
منشور في: (2017-06-01)

Fish diversity assessment and semi-quantitative biomass estimation through metabarcoding of environmental DNA
حسب: Yassine Kasmi, وآخرون
منشور في: (2025-04-01)

Metabarcoding the night sky: Monitoring landscape-scale insect diversity through bat diet
حسب: Cynthia Tobisch, وآخرون
منشور في: (2025-03-01)

Prey choice in insectivorous steppe passerines: New insights from DNA metabarcoding
حسب: Julia Zurdo, وآخرون
منشور في: (2023-12-01)

Environmental DNA metabarcoding from flowers reveals arthropod pollinators, plant pests, parasites, and potential predator–prey interactions while revealing more arthropod diversity than camera traps
حسب: Mark D. Johnson, وآخرون
منشور في: (2023-05-01)

Small Bugs, Big Data: Metagenomics for Arthropod Biodiversity Monitoring
حسب: Samantha López Clinton, وآخرون
منشور في: (2025-09-01)

Design and Validation of Specific qPCR Primers for Soil-Borne and Apple Tree-Associated Phytopathogenic Fungi
حسب: Gudam Kwon, وآخرون
منشور في: (2025-08-01)