Genome-wide selection signatures address trait specific candidate genes in cattle indigenous to arid regions of India

The peculiarity of Indian cattle lies in milk quality, resistance to diseases and stressors as well as adaptability. The investigation addressed selection signatures in Gir and Tharparkar cattle, belonging to arid ecotypes of India. Double digest restriction-site associated DNA sequencing (ddRAD-seq...

Full description

Bibliographic Details
Published in:	Animal Biotechnology
Main Authors:	Nidhi Sukhija, Anoop Anand Malik, Joel M. Devadasan, Aishwarya Dash, Kangabam Bidyalaxmi, D. Ravi Kumar, M. Kousalaya Devi, Anjali Choudhary, K. K. Kanaka, Rekha Sharma, Shashi Bhushan Tripathi, Saket Kumar Niranjan, Jayakumar Sivalingam, Archana Verma
Format:	Article
Language:	English
Published:	Taylor & Francis Group 2024-12-01
Subjects:	ddRAD-seq Gir Tharparkar selection signatures SNPs
Online Access:	https://www.tandfonline.com/doi/10.1080/10495398.2023.2290521

Similar Items

Fine-scale adaptive divergence and population genetic structure of Aedes aegypti in Metropolitan Manila, Philippines
by: Atikah Fitria Muharromah, et al.
Published: (2024-05-01)

Up, Down, and All Around: Courtship Behavior Deviants and Genetic Divergence in the Reef‐Dwelling Bioluminescent Ostracod, Photeros annecohenae (Myodocopida: Cypridinidae)
by: Nicholas J. Reda, et al.
Published: (2025-10-01)

Limited genetic diversity found among genotypes of the Entada landrace (Ensete ventricosum, (Welw.) Chessman) from Ethiopia
by: Alye Tefera Haile, et al.
Published: (2024-09-01)

Genetic diversity insights from population genomics and machine learning tools for Nordic Arctic charr (Salvelinus alpinus) populations
by: Christos Palaiokostas, et al.
Published: (2024-12-01)

Genomic Divergence of Sympatric Lineages Within Stichopus cf. horrens (Echinodermata: Stichopodidae): Insights on Reproductive Isolation Inferred From SNP Markers
by: Kenneth M. Kim, et al.
Published: (2025-04-01)

Population genomics reveals a mismatch between management and biological units in green abalone (Haliotis fulgens)
by: Paulina Mejía-Ruíz, et al.
Published: (2020-08-01)

Citizen science facilitates first ever genetic detection of wolf‐dog hybridization in Indian savannahs
by: Abhinav Tyagi, et al.
Published: (2023-05-01)

Development and parentage analysis of SNP markers for Chestnut-vented Nuthatch (Sitta nagaensis) based on ddRAD-seq data
by: Qingmiao Yuan, et al.
Published: (2024-01-01)

Genome‐wide SNPs of vegetable leafminer, Liriomyza sativae: Insights into the recent Australian invasion
by: Xuefen Xu, et al.
Published: (2022-07-01)

Genetic diversity and structure in Arapaima gigas populations from Amazon and Araguaia-Tocantins river basins
by: Lucas Simon Torati, et al.
Published: (2019-01-01)

Assessing the genetic diversity of farmed and wild Rufiji tilapia (Oreochromis urolepis urolepis) populations using ddRAD sequencing
by: Christer S. Nyinondi, et al.
Published: (2020-09-01)

Assessing Sperm Quality Parameters in Mass‐Spawning Norwegian Arctic Charr
by: Khrystyna Kurta, et al.
Published: (2025-08-01)

Research note: double digest restriction site associated DNA sequencing is a suitable alternative to high density SNP chips for genomic selection of layers
by: Mathilde Doublet, et al.
Published: (2025-07-01)

Profiling the Diversity of Sweet Pepper ‘Peperone Cornetto di Pontecorvo’ PDO (<i>Capsicum annuum</i>) through Multi-Phenomic Approaches and Sequencing-Based Genotyping
by: Pasquale Tripodi, et al.
Published: (2022-06-01)

Polymorphism in the aggressive mimicry lure of the parasitic freshwater mussel Lampsilis fasciola
by: Trevor L. Hewitt, et al.
Published: (2024-05-01)

The Genomics of Isolated Populations of <i>Gampsocleis glabra</i> (Orthoptera: Tettigoniidae) in Central and Western Europe
by: Oliver Hawlitschek, et al.
Published: (2023-12-01)

Development and validation of novel SNP markers for the rapid identification of natural hybrids of the 11 closely related pufferfish species (Takifugu spp.) distributed in Japan
by: Hiroshi Takahashi, et al.
Published: (2023-08-01)

Weighted single step GWAS reveals genomic regions associated with economic traits in Murrah buffaloes
by: Linda George, et al.
Published: (2024-12-01)

Phylogenomic relationships and species delimitation of Cotoneaster ser. Pannosi, ser. Buxifolii, and related taxa
by: Jiaxuan Huang, et al.
Published: (2025-05-01)

The evaluation of different combinations of enzyme set, aligner and caller in GBS sequencing of soybean
by: Aleksei Zamalutdinov, et al.
Published: (2025-08-01)

Genome-wide detection of Wolbachia in natural Aedes aegypti populations using ddRAD-Seq
by: Atikah Fitria Muharromah, et al.
Published: (2023-12-01)

Speciation and repeated origins of hypertrophied lips in parallel adaptive radiations of cyprinid fish from East Africa
by: Boris Levin, et al.
Published: (2023-09-01)

High-Density Genetic Map Construction and QTL Detection for Cotyledon Color in Faba Bean Based on Double Digest Restriction-Site Associated DNA Sequencing (ddRAD-Seq)
by: Changcai Teng, et al.
Published: (2025-01-01)

Adaptive radiation of the Callicarpa genus in the Bonin Islands revealed through double‐digest restriction site‐associated DNA sequencing analysis
by: Suzuki Setsuko, et al.
Published: (2024-09-01)

Mapping of a novel clubroot resistance QTL using ddRAD-seq in Chinese cabbage (Brassica rapa L.)
by: Rawnak Laila, et al.
Published: (2019-01-01)

Complex patterns of genetic population structure in the mouthbrooding marine catfish, Bagre marinus, in the Gulf of Mexico and U.S. Atlantic
by: David S. Portnoy, et al.
Published: (2024-06-01)

Connectivity enhances resilience of marine forests after an extreme event
by: Sofie Vranken, et al.
Published: (2025-02-01)

Evaluating the use of non‐invasive hair sampling and ddRAD to characterize populations of endangered species: Application to a peripheral population of the European mink
by: Alfonso Balmori‐de la Puente, et al.
Published: (2023-09-01)

Optimized In Vitro Restriction Digestion Protocol for Preparing Maize and Barley ddRAD-Seq Libraries
by: Marta Puchta-Jasińska, et al.
Published: (2023-11-01)

Geography, climate and shifts in host plants distribution explain the genomic variation in the cactus moth
by: Daniel Poveda-Martínez, et al.
Published: (2023-09-01)

Genomic signatures of hybridization between Ixodes ricinus and Ixodes persulcatus in natural populations
by: Theophilus Yaw Alale, et al.
Published: (2024-05-01)

The uplift of the Hengduan Mountains contributed to the speciation of three Rhododendron species
by: Kailai Wang, et al.
Published: (2022-06-01)

Reticulate evolution as a management challenge: Patterns of admixture with phylogenetic distance in endemic fishes of western North America
by: Max R. Bangs, et al.
Published: (2020-07-01)

ddRAD Sequencing-Based Scanning of Genetic Variants in <i>Sargassum fusiforme</i>
by: Lidong Lin, et al.
Published: (2022-07-01)

Conservation Genomics of a Threatened Rhododendron: Contrasting Patterns of Population Structure Revealed From Neutral and Selected SNPs
by: Detuan Liu, et al.
Published: (2020-09-01)

Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci
by: Bruno A. S. de Medeiros, et al.
Published: (2018-07-01)

Study on the Genetic Diversity Characteristics of the Endemic Plant Rhododendron bailiense in Guizhou, China Based on SNP Molecular Markers
by: Jun Luo, et al.
Published: (2025-02-01)

Hybridization ddRAD‐sequencing and phenotypic analysis clarify the phylogeographic structure and evolution of an alpine Chrysanthemum species with a sky island distribution
by: Xue-Ying Hu, et al.
Published: (2025-04-01)

Genetic diversity analysis and core germplasm construction of tea plants in Lu’an
by: Yan Wang, et al.
Published: (2025-02-01)

Genomic insights into the conservation status of the Idle Crayfish Austropotamobius bihariensis Pârvulescu, 2019: low genetic diversity in the endemic crayfish species of the Apuseni Mountains
by: Lena Bonassin, et al.
Published: (2024-06-01)