Protocol for processing and analyzing multiplexed images improves lymphatic cell identification and spatial architecture in human tissue
Summary: Multiplexed images of human lymphatic tissue are extensively preprocessed before cell phenotyping and spatial analysis. Here, we present KINTSUGI (knowledge integration with new technologies: simplified user-guided image processing), a protocol designed to interactively engage the user in e...
| Published in: | STAR Protocols |
|---|---|
| Main Authors: | Justin A. Smith, Drew T. Bloss, MacKenzie D. Williams, Amanda L. Posgai, Todd M. Brusko, Mark A. Atkinson, Clive H. Wasserfall, Maigan A. Brusko |
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2025-09-01
|
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S266616672500382X |
Similar Items
Impaired islet function and normal exocrine enzyme secretion occur with low inter-regional variation in type 1 diabetes
by: Denise M. Drotar, et al.
Published: (2024-06-01)
by: Denise M. Drotar, et al.
Published: (2024-06-01)
Serological markers of exocrine pancreatic function are differentially informative for distinguishing individuals progressing to type 1 diabetes
by: Desmond Schatz, et al.
Published: (2025-01-01)
by: Desmond Schatz, et al.
Published: (2025-01-01)
Human immune phenotyping reveals accelerated aging in type 1 diabetes
by: Melanie R. Shapiro, et al.
Published: (2023-09-01)
by: Melanie R. Shapiro, et al.
Published: (2023-09-01)
Influence of membrane CD25 stability on T lymphocyte activity: implications for immunoregulation.
by: Todd M Brusko, et al.
Published: (2009-11-01)
by: Todd M Brusko, et al.
Published: (2009-11-01)
MHC2-SCALE enhances identification of immunogenic neoantigens
by: Joshua G. Gober, et al.
Published: (2025-04-01)
by: Joshua G. Gober, et al.
Published: (2025-04-01)
Protocol for preparing murine tissue for comparative proteomics study of vaccine adjuvant mechanisms
by: Yibo Li, et al.
Published: (2023-09-01)
by: Yibo Li, et al.
Published: (2023-09-01)
Sphingosine-1-phosphate in the lymphatic fluid determined by novel methods
by: Masayuki Nagahashi, et al.
Published: (2016-12-01)
by: Masayuki Nagahashi, et al.
Published: (2016-12-01)
Serum proteomics of mother-infant dyads carrying HLA-conferred type 1 diabetes risk
by: Santosh D. Bhosale, et al.
Published: (2024-06-01)
by: Santosh D. Bhosale, et al.
Published: (2024-06-01)
Identifying cytokine signaling signatures in primary human Th-1 cells by phospho-proteomics analysis
by: Jonathan Martinez-Fabregas, et al.
Published: (2021-06-01)
by: Jonathan Martinez-Fabregas, et al.
Published: (2021-06-01)
Characterizing cell-type spatial relationships across length scales in spatially resolved omics data
by: Rafael dos Santos Peixoto, et al.
Published: (2025-01-01)
by: Rafael dos Santos Peixoto, et al.
Published: (2025-01-01)
ACE2 chromogenic immunostaining protocol optimized for formalin-fixed paraffin-embedded human tissue sections
by: Marda Jorgensen, et al.
Published: (2021-09-01)
by: Marda Jorgensen, et al.
Published: (2021-09-01)
Protocol for multiplex immunofluorescence imaging of mouse intestinal tumors
by: Shuqin Li, et al.
Published: (2025-06-01)
by: Shuqin Li, et al.
Published: (2025-06-01)
Methionine oxidation selectively enhances T cell reactivity against a melanoma antigen
by: Gabriela N. Chiriţoiu, et al.
Published: (2023-07-01)
by: Gabriela N. Chiriţoiu, et al.
Published: (2023-07-01)
Sequential trypsin and ProAlanase digestions unearth immunological protein biomarkers shrouded by skeletal collagen
by: Shevan Wilkin, et al.
Published: (2024-05-01)
by: Shevan Wilkin, et al.
Published: (2024-05-01)
More time to kill: A longer liver stage increases T cell-mediated protection against pre-erythrocytic malaria
by: Naveen Yadav, et al.
Published: (2023-12-01)
by: Naveen Yadav, et al.
Published: (2023-12-01)
Characterization model of the post COVID-19 condition based on immunological, biochemical, and cytokine markers
by: Bárbara Oliván-Blázquez, et al.
Published: (2024-09-01)
by: Bárbara Oliván-Blázquez, et al.
Published: (2024-09-01)
LncNSPL facilitates influenza A viral immune escape by restricting TRIM25-mediated K63-linked RIG-I ubiquitination
by: Jingjing Jiang, et al.
Published: (2022-07-01)
by: Jingjing Jiang, et al.
Published: (2022-07-01)
Vimentin is an important ACE2 co-receptor for SARS-CoV-2 in epithelial cells
by: Jeffrey Arrindell, et al.
Published: (2022-11-01)
by: Jeffrey Arrindell, et al.
Published: (2022-11-01)
LGP2 is essential for zebrafish survival through dual regulation of IFN antiviral response
by: Xiu-Ying Gong, et al.
Published: (2022-08-01)
by: Xiu-Ying Gong, et al.
Published: (2022-08-01)
Histone deacetylase-2 controls IL-1β production through the regulation of NLRP3 expression and activation in tuberculosis infection
by: Jôsimar Dornelas Moreira, et al.
Published: (2022-08-01)
by: Jôsimar Dornelas Moreira, et al.
Published: (2022-08-01)
The correlation between expression of sip protein in different serotypes of group b streptococcus and diagnosis
by: Shiliang Cheng, et al.
Published: (2019-06-01)
by: Shiliang Cheng, et al.
Published: (2019-06-01)
Protocol for studying the immune microenvironment of human hepatocellular carcinoma by Cell DIVE multiplex immunofluorescence imaging
by: Margaux Delaporte, et al.
Published: (2025-09-01)
by: Margaux Delaporte, et al.
Published: (2025-09-01)
Protocol to determine antibody affinity and concentration in complex solutions using microfluidic antibody affinity profiling
by: Marc Emmenegger, et al.
Published: (2023-03-01)
by: Marc Emmenegger, et al.
Published: (2023-03-01)
Protocol for investigating tertiary lymphoid structures in human and murine fixed tissue sections using Opal™-TSA multiplex immunohistochemistry
by: Luke T. Quigley, et al.
Published: (2023-03-01)
by: Luke T. Quigley, et al.
Published: (2023-03-01)
Phosphorylation of plectin by Akt3 promotes triple-negative breast cancer cell invasive migration
by: Shixue Zheng, et al.
Published: (2025-10-01)
by: Shixue Zheng, et al.
Published: (2025-10-01)
Measuring in vivo protein turnover and exchange in yeast macromolecular assemblies
by: Zhanna Hakhverdyan, et al.
Published: (2021-09-01)
by: Zhanna Hakhverdyan, et al.
Published: (2021-09-01)
Protocol to analyze marrow B lineage cell dynamics by in vivo three-photon microscopy in intact mouse tibia
by: Anne Bias, et al.
Published: (2025-06-01)
by: Anne Bias, et al.
Published: (2025-06-01)
Protocol for 3D multiplexed fluorescent imaging of pulmonary TB lesions using Opal-TSA dyes for signal amplification
by: Suruchi Lata, et al.
Published: (2025-03-01)
by: Suruchi Lata, et al.
Published: (2025-03-01)
A Structurally Simple Vaccine Candidate Reduces Progression and Dissemination of Triple-Negative Breast Cancer
by: Amedeo Amedei, et al.
Published: (2020-06-01)
by: Amedeo Amedei, et al.
Published: (2020-06-01)
Melatonin alleviates high-fat-diet-induced dry eye by regulating macrophage polarization via IFT27 and lowering ERK/JNK phosphorylation
by: Yuying Cai, et al.
Published: (2024-07-01)
by: Yuying Cai, et al.
Published: (2024-07-01)
Targeting PfProhibitin 2-Hu-Hsp70A1A complex as a unique approach towards malaria vaccine development
by: Manisha Marothia, et al.
Published: (2024-06-01)
by: Manisha Marothia, et al.
Published: (2024-06-01)
PGLYRP1-mIgG2a-Fc inhibits macrophage activation via AKT/NF-κB signaling and protects against fatal lung injury during bacterial infection
by: Yan Jia, et al.
Published: (2023-05-01)
by: Yan Jia, et al.
Published: (2023-05-01)
Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies
by: Youngchang Kim, et al.
Published: (2024-02-01)
by: Youngchang Kim, et al.
Published: (2024-02-01)
Phase variable acetylation of lipooligosaccharide modifies antibody production and opsonophagocytic killing of non-typeable Haemophilus influenzae
by: Brandon M. Wills, et al.
Published: (2023-10-01)
by: Brandon M. Wills, et al.
Published: (2023-10-01)
Behavior of glycolylated sialoglycans in the binding pockets of murine and human CD22
by: Cristina Di Carluccio, et al.
Published: (2021-01-01)
by: Cristina Di Carluccio, et al.
Published: (2021-01-01)
Manganese enhances DNA- or RNA-mediated innate immune response by inducing phosphorylation of TANK-binding kinase 1
by: Hongyan Sui, et al.
Published: (2022-11-01)
by: Hongyan Sui, et al.
Published: (2022-11-01)
Residue-Specific Message Encoding in CD40-Ligand
by: Aditya Yashwant Sarode, et al.
Published: (2020-09-01)
by: Aditya Yashwant Sarode, et al.
Published: (2020-09-01)
Characterization of antibody-antigen interactions using biolayer interferometry
by: Tal Noy-Porat, et al.
Published: (2021-12-01)
by: Tal Noy-Porat, et al.
Published: (2021-12-01)
Targeting synergetic endothelial inflammation by inhibiting NFKB and JAK-STAT pathways
by: Stijn A. Groten, et al.
Published: (2025-09-01)
by: Stijn A. Groten, et al.
Published: (2025-09-01)
Cellular targets and lysine selectivity of the HERC5 ISG15 ligase
by: Xu Zhao, et al.
Published: (2024-02-01)
by: Xu Zhao, et al.
Published: (2024-02-01)
Similar Items
-
Impaired islet function and normal exocrine enzyme secretion occur with low inter-regional variation in type 1 diabetes
by: Denise M. Drotar, et al.
Published: (2024-06-01) -
Serological markers of exocrine pancreatic function are differentially informative for distinguishing individuals progressing to type 1 diabetes
by: Desmond Schatz, et al.
Published: (2025-01-01) -
Human immune phenotyping reveals accelerated aging in type 1 diabetes
by: Melanie R. Shapiro, et al.
Published: (2023-09-01) -
Influence of membrane CD25 stability on T lymphocyte activity: implications for immunoregulation.
by: Todd M Brusko, et al.
Published: (2009-11-01) -
MHC2-SCALE enhances identification of immunogenic neoantigens
by: Joshua G. Gober, et al.
Published: (2025-04-01)
