An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious Diseases

Digital droplet PCR (ddPCR) is a powerful amplification technique for absolute quantification of viral nucleic acids. Although commercial ddPCR devices are effective in the lab bench tests, they cannot meet current urgent requirements for on-site and rapid screening for patients. Here, we have devel...

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出版年:Biosensors
主要な著者: Wanyi Zhang, Lili Cui, Yuye Wang, Zhenming Xie, Yuanyuan Wei, Shaodi Zhu, Mehmood Nawaz, Wing-Cheung Mak, Ho-Pui Ho, Dayong Gu, Shuwen Zeng
フォーマット: 論文
言語:英語
出版事項: MDPI AG 2023-12-01
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オンライン・アクセス:https://www.mdpi.com/2079-6374/14/1/2
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author Wanyi Zhang
Lili Cui
Yuye Wang
Zhenming Xie
Yuanyuan Wei
Shaodi Zhu
Mehmood Nawaz
Wing-Cheung Mak
Ho-Pui Ho
Dayong Gu
Shuwen Zeng
author_facet Wanyi Zhang
Lili Cui
Yuye Wang
Zhenming Xie
Yuanyuan Wei
Shaodi Zhu
Mehmood Nawaz
Wing-Cheung Mak
Ho-Pui Ho
Dayong Gu
Shuwen Zeng
author_sort Wanyi Zhang
collection DOAJ
container_title Biosensors
description Digital droplet PCR (ddPCR) is a powerful amplification technique for absolute quantification of viral nucleic acids. Although commercial ddPCR devices are effective in the lab bench tests, they cannot meet current urgent requirements for on-site and rapid screening for patients. Here, we have developed a portable and fully integrated lab-on-a-disc (LOAD) device for quantitively screening infectious disease agents. Our designed LOAD device has integrated (i) microfluidics chips, (ii) a transparent circulating oil-based heat exchanger, and (iii) an on-disc transmitted-light fluorescent imaging system into one compact and portable box. Thus, droplet generation, PCR thermocycling, and analysis can be achieved in a single LOAD device. This feature is a significant attribute for the current clinical application of disease screening. For this custom-built ddPCR setup, we have first demonstrated the loading and ddPCR amplification ability by using influenza A virus-specific DNA fragments with different concentrations (diluted from the original concentration to 10<sup>7</sup> times), followed by analyzing the droplets with an external fluorescence microscope as a standard calibration test. The measured DNA concentration is linearly related to the gradient–dilution factor, which validated the precise quantification for the samples. In addition to the calibration tests using DNA fragments, we also employed this ddPCR-LOAD device for clinical samples with different viruses. Infectious samples containing five different viruses, including influenza A virus (IAV), respiratory syncytial virus (RSV), varicella zoster virus (VZV), Zika virus (ZIKV), and adenovirus (ADV), were injected into the device, followed by analyzing the droplets with an external fluorescence microscope with the lowest detected concentration of 20.24 copies/µL. Finally, we demonstrated the proof-of-concept detection of clinical samples of IAV using the on-disc fluorescence imaging system in our fully integrated device, which proves the capability of this device in clinical sample detection. We anticipate that this integrated ddPCR-LOAD device will become a flexible tool for on-site disease detection.
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spelling doaj-art-9917092af1ab4ff3b58e098287c1906a2025-08-19T23:52:27ZengMDPI AGBiosensors2079-63742023-12-01141210.3390/bios14010002An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious DiseasesWanyi Zhang0Lili Cui1Yuye Wang2Zhenming Xie3Yuanyuan Wei4Shaodi Zhu5Mehmood Nawaz6Wing-Cheung Mak7Ho-Pui Ho8Dayong Gu9Shuwen Zeng10Department of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, ChinaSchool of Public Health, Guangdong Medical University, Dongguan 523808, ChinaKey Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, ChinaDepartment of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, ChinaDepartment of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, ChinaDepartment of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, ChinaDepartment of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, ChinaDepartment of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, ChinaDepartment of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, ChinaLaboratory Medicine, Shenzhen Key Laboratory of Medical Laboratory and Molecular Diagnostics, Shenzhen Institute of Translational Medicine, The First Affiliated Hospital of Shenzhen University, Shenzhen Second People’s Hospital, Shenzhen 518035, ChinaLight, Nanomaterials & Nanotechnologies (L2n), CNRS-EMR 7004, Université de Technologie de Troyes, 10000 Troyes, FranceDigital droplet PCR (ddPCR) is a powerful amplification technique for absolute quantification of viral nucleic acids. Although commercial ddPCR devices are effective in the lab bench tests, they cannot meet current urgent requirements for on-site and rapid screening for patients. Here, we have developed a portable and fully integrated lab-on-a-disc (LOAD) device for quantitively screening infectious disease agents. Our designed LOAD device has integrated (i) microfluidics chips, (ii) a transparent circulating oil-based heat exchanger, and (iii) an on-disc transmitted-light fluorescent imaging system into one compact and portable box. Thus, droplet generation, PCR thermocycling, and analysis can be achieved in a single LOAD device. This feature is a significant attribute for the current clinical application of disease screening. For this custom-built ddPCR setup, we have first demonstrated the loading and ddPCR amplification ability by using influenza A virus-specific DNA fragments with different concentrations (diluted from the original concentration to 10<sup>7</sup> times), followed by analyzing the droplets with an external fluorescence microscope as a standard calibration test. The measured DNA concentration is linearly related to the gradient–dilution factor, which validated the precise quantification for the samples. In addition to the calibration tests using DNA fragments, we also employed this ddPCR-LOAD device for clinical samples with different viruses. Infectious samples containing five different viruses, including influenza A virus (IAV), respiratory syncytial virus (RSV), varicella zoster virus (VZV), Zika virus (ZIKV), and adenovirus (ADV), were injected into the device, followed by analyzing the droplets with an external fluorescence microscope with the lowest detected concentration of 20.24 copies/µL. Finally, we demonstrated the proof-of-concept detection of clinical samples of IAV using the on-disc fluorescence imaging system in our fully integrated device, which proves the capability of this device in clinical sample detection. We anticipate that this integrated ddPCR-LOAD device will become a flexible tool for on-site disease detection.https://www.mdpi.com/2079-6374/14/1/2lab-on-a-disc (LOAD)digital droplet PCRinspection of infectious diseaseclinical detectionpoint-of-care (POC)
spellingShingle Wanyi Zhang
Lili Cui
Yuye Wang
Zhenming Xie
Yuanyuan Wei
Shaodi Zhu
Mehmood Nawaz
Wing-Cheung Mak
Ho-Pui Ho
Dayong Gu
Shuwen Zeng
An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious Diseases
lab-on-a-disc (LOAD)
digital droplet PCR
inspection of infectious disease
clinical detection
point-of-care (POC)
title An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious Diseases
title_full An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious Diseases
title_fullStr An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious Diseases
title_full_unstemmed An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious Diseases
title_short An Integrated ddPCR Lab-on-a-Disc Device for Rapid Screening of Infectious Diseases
title_sort integrated ddpcr lab on a disc device for rapid screening of infectious diseases
topic lab-on-a-disc (LOAD)
digital droplet PCR
inspection of infectious disease
clinical detection
point-of-care (POC)
url https://www.mdpi.com/2079-6374/14/1/2
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