Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction

Phylodynamic models can be used to estimate diversification trajectories from time-calibrated phylogenies. Here we apply two such models to phylogenies of non-avian dinosaurs, a clade whose evolutionary history has been widely debated. Although some authors have suggested that the clade experienced...

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Published in:Cambridge Prisms: Extinction
Main Authors: Bethany J. Allen, Maria V. Volkova Oliveira, Tanja Stadler, Timothy G. Vaughan, Rachel C. M. Warnock
Format: Article
Language:English
Published: Cambridge University Press 2024-01-01
Subjects:
Online Access:https://www.cambridge.org/core/product/identifier/S2755095824000056/type/journal_article
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author Bethany J. Allen
Maria V. Volkova Oliveira
Tanja Stadler
Timothy G. Vaughan
Rachel C. M. Warnock
author_facet Bethany J. Allen
Maria V. Volkova Oliveira
Tanja Stadler
Timothy G. Vaughan
Rachel C. M. Warnock
author_sort Bethany J. Allen
collection DOAJ
container_title Cambridge Prisms: Extinction
description Phylodynamic models can be used to estimate diversification trajectories from time-calibrated phylogenies. Here we apply two such models to phylogenies of non-avian dinosaurs, a clade whose evolutionary history has been widely debated. Although some authors have suggested that the clade experienced a decline in diversity, potentially starting millions of years before the end-Cretaceous mass extinction, others have suggested that the group remained highly diverse right up until the Cretaceous-Paleogene (K-Pg) boundary. Our results show that model assumptions, likely with respect to incomplete sampling, have a large impact on whether dinosaurs appear to have experienced a long-term decline or not. The results are also highly sensitive to the topology and branch lengths of the phylogeny used. Developing comprehensive models of sampling bias, and building larger and more accurate phylogenies, are likely to be necessary steps for us to determine whether dinosaur diversity was or was not in decline before the end-Cretaceous mass extinction.
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spelling doaj-art-a4ab7bcc071f4b79b72bc50d22b27ea22025-08-20T00:00:10ZengCambridge University PressCambridge Prisms: Extinction2755-09582024-01-01210.1017/ext.2024.5Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinctionBethany J. Allen0https://orcid.org/0000-0003-0282-6407Maria V. Volkova Oliveira1Tanja Stadler2Timothy G. Vaughan3Rachel C. M. Warnock4Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland Computational Evolution Group, Swiss Institute of Bioinformatics, Lausanne, SwitzerlandIndependentDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland Computational Evolution Group, Swiss Institute of Bioinformatics, Lausanne, SwitzerlandDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland Computational Evolution Group, Swiss Institute of Bioinformatics, Lausanne, SwitzerlandGeozentrum Nordbayern, Friedrich-Alexander-Universität, Erlangen, GermanyPhylodynamic models can be used to estimate diversification trajectories from time-calibrated phylogenies. Here we apply two such models to phylogenies of non-avian dinosaurs, a clade whose evolutionary history has been widely debated. Although some authors have suggested that the clade experienced a decline in diversity, potentially starting millions of years before the end-Cretaceous mass extinction, others have suggested that the group remained highly diverse right up until the Cretaceous-Paleogene (K-Pg) boundary. Our results show that model assumptions, likely with respect to incomplete sampling, have a large impact on whether dinosaurs appear to have experienced a long-term decline or not. The results are also highly sensitive to the topology and branch lengths of the phylogeny used. Developing comprehensive models of sampling bias, and building larger and more accurate phylogenies, are likely to be necessary steps for us to determine whether dinosaur diversity was or was not in decline before the end-Cretaceous mass extinction.https://www.cambridge.org/core/product/identifier/S2755095824000056/type/journal_articlediversificationfossilsphylogeniesCenozoic
spellingShingle Bethany J. Allen
Maria V. Volkova Oliveira
Tanja Stadler
Timothy G. Vaughan
Rachel C. M. Warnock
Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
diversification
fossils
phylogenies
Cenozoic
title Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
title_full Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
title_fullStr Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
title_full_unstemmed Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
title_short Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
title_sort mechanistic phylodynamic models do not provide conclusive evidence that non avian dinosaurs were in decline before their final extinction
topic diversification
fossils
phylogenies
Cenozoic
url https://www.cambridge.org/core/product/identifier/S2755095824000056/type/journal_article
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AT tanjastadler mechanisticphylodynamicmodelsdonotprovideconclusiveevidencethatnonaviandinosaurswereindeclinebeforetheirfinalextinction
AT timothygvaughan mechanisticphylodynamicmodelsdonotprovideconclusiveevidencethatnonaviandinosaurswereindeclinebeforetheirfinalextinction
AT rachelcmwarnock mechanisticphylodynamicmodelsdonotprovideconclusiveevidencethatnonaviandinosaurswereindeclinebeforetheirfinalextinction