Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
Phylodynamic models can be used to estimate diversification trajectories from time-calibrated phylogenies. Here we apply two such models to phylogenies of non-avian dinosaurs, a clade whose evolutionary history has been widely debated. Although some authors have suggested that the clade experienced...
| Published in: | Cambridge Prisms: Extinction |
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| Main Authors: | , , , , |
| Format: | Article |
| Language: | English |
| Published: |
Cambridge University Press
2024-01-01
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| Subjects: | |
| Online Access: | https://www.cambridge.org/core/product/identifier/S2755095824000056/type/journal_article |
| _version_ | 1850109871858384896 |
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| author | Bethany J. Allen Maria V. Volkova Oliveira Tanja Stadler Timothy G. Vaughan Rachel C. M. Warnock |
| author_facet | Bethany J. Allen Maria V. Volkova Oliveira Tanja Stadler Timothy G. Vaughan Rachel C. M. Warnock |
| author_sort | Bethany J. Allen |
| collection | DOAJ |
| container_title | Cambridge Prisms: Extinction |
| description | Phylodynamic models can be used to estimate diversification trajectories from time-calibrated phylogenies. Here we apply two such models to phylogenies of non-avian dinosaurs, a clade whose evolutionary history has been widely debated. Although some authors have suggested that the clade experienced a decline in diversity, potentially starting millions of years before the end-Cretaceous mass extinction, others have suggested that the group remained highly diverse right up until the Cretaceous-Paleogene (K-Pg) boundary. Our results show that model assumptions, likely with respect to incomplete sampling, have a large impact on whether dinosaurs appear to have experienced a long-term decline or not. The results are also highly sensitive to the topology and branch lengths of the phylogeny used. Developing comprehensive models of sampling bias, and building larger and more accurate phylogenies, are likely to be necessary steps for us to determine whether dinosaur diversity was or was not in decline before the end-Cretaceous mass extinction. |
| format | Article |
| id | doaj-art-a4ab7bcc071f4b79b72bc50d22b27ea2 |
| institution | Directory of Open Access Journals |
| issn | 2755-0958 |
| language | English |
| publishDate | 2024-01-01 |
| publisher | Cambridge University Press |
| record_format | Article |
| spelling | doaj-art-a4ab7bcc071f4b79b72bc50d22b27ea22025-08-20T00:00:10ZengCambridge University PressCambridge Prisms: Extinction2755-09582024-01-01210.1017/ext.2024.5Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinctionBethany J. Allen0https://orcid.org/0000-0003-0282-6407Maria V. Volkova Oliveira1Tanja Stadler2Timothy G. Vaughan3Rachel C. M. Warnock4Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland Computational Evolution Group, Swiss Institute of Bioinformatics, Lausanne, SwitzerlandIndependentDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland Computational Evolution Group, Swiss Institute of Bioinformatics, Lausanne, SwitzerlandDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland Computational Evolution Group, Swiss Institute of Bioinformatics, Lausanne, SwitzerlandGeozentrum Nordbayern, Friedrich-Alexander-Universität, Erlangen, GermanyPhylodynamic models can be used to estimate diversification trajectories from time-calibrated phylogenies. Here we apply two such models to phylogenies of non-avian dinosaurs, a clade whose evolutionary history has been widely debated. Although some authors have suggested that the clade experienced a decline in diversity, potentially starting millions of years before the end-Cretaceous mass extinction, others have suggested that the group remained highly diverse right up until the Cretaceous-Paleogene (K-Pg) boundary. Our results show that model assumptions, likely with respect to incomplete sampling, have a large impact on whether dinosaurs appear to have experienced a long-term decline or not. The results are also highly sensitive to the topology and branch lengths of the phylogeny used. Developing comprehensive models of sampling bias, and building larger and more accurate phylogenies, are likely to be necessary steps for us to determine whether dinosaur diversity was or was not in decline before the end-Cretaceous mass extinction.https://www.cambridge.org/core/product/identifier/S2755095824000056/type/journal_articlediversificationfossilsphylogeniesCenozoic |
| spellingShingle | Bethany J. Allen Maria V. Volkova Oliveira Tanja Stadler Timothy G. Vaughan Rachel C. M. Warnock Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction diversification fossils phylogenies Cenozoic |
| title | Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction |
| title_full | Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction |
| title_fullStr | Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction |
| title_full_unstemmed | Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction |
| title_short | Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction |
| title_sort | mechanistic phylodynamic models do not provide conclusive evidence that non avian dinosaurs were in decline before their final extinction |
| topic | diversification fossils phylogenies Cenozoic |
| url | https://www.cambridge.org/core/product/identifier/S2755095824000056/type/journal_article |
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